| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0295 |
|---|
| Symbol | gidB |
|---|
| ID | 6407941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 316100 |
|---|
| End bp | 316771 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642710205 |
|---|
| Product | 16S rRNA methyltransferase GidB |
|---|
| Protein accession | YP_001989331 |
|---|
| Protein GI | 192288726 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
|---|
| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.408188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCG CTGCCAGACC TCTCGTTTCC GTCTCAGACC TCGACGCTGA CAAAGCGGCG
GCGCTGAAGC TCATCCCAAT CCCGTCGGCG CTCGAAGCCC GCCTCGATGC CTATGTCGCG
CTGCTGCAGC AATGGCAGGC TAAGACTAAC CTGGTCGCTC CCTCGACCCT GCCGCAGCTT
TGGACCCGGC ACGTCGCGGA TTCGCTGCAG CTGGTCAGTC TGATGCCGCA TGCCCGGCGA
TGGCTCGACT TCGGATCGGG AGGCGGGTTT CCCGGTGTGG TGCTGGCCTG CGCGATGGCG
GACGTCGGTG GACACGTCAC GTTGGTGGAG AGGATTGCCA AGAAGGCCGC GTTCCTGCGC
GAGGCGCTCC GCGTCGCGGG CGCACCGGGC ACAGTCGTTC TCGCGGACAT CGGGGATAAC
GTGGATAGAT TCCCACAAGC CCTCGATTGC ATCACCGCCC GTGCGGTCGC TCCGCTACAC
CAGCTCATCG GTTTTGCCGA ACCGCTGATG ACCCCCGGAA TCACAAAGGC GTTGTTCCTG
AAAGGTCAAG ATGTAGATGC AGAATTGACG GAATCTACTA AATATTGGAA ATTCCAGCCC
AAGCTGCATG CCAGCTTGAC CGGTGGCCAG GGCTGGATCG TCGAAATCGA CCACATCGAA
CGACGCACAT AA
|
|---|
| Protein sequence | MQRAARPLVS VSDLDADKAA ALKLIPIPSA LEARLDAYVA LLQQWQAKTN LVAPSTLPQL
WTRHVADSLQ LVSLMPHARR WLDFGSGGGF PGVVLACAMA DVGGHVTLVE RIAKKAAFLR
EALRVAGAPG TVVLADIGDN VDRFPQALDC ITARAVAPLH QLIGFAEPLM TPGITKALFL
KGQDVDAELT ESTKYWKFQP KLHASLTGGQ GWIVEIDHIE RRT
|
|---|
| |