| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1661 |
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| Symbol | xynB3 |
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| ID | 6364555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 1998435 |
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| End bp | 2001140 |
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| Gene Length | 2706 bp |
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| Protein Length | 901 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642680857 |
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| Product | endo-1,4-beta-xylanase/Beta-xylosidase |
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| Protein accession | YP_001955604 |
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| Protein GI | 189440523 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAACA CGGATGTTCC GGATATCAGT GTTATTCGTG TGTCGAAGGA CGATCCGAAT
AACAAAGACG GTCGTGATGT GTATTACATG GTGAGTACCA CTATGGAGCT CAGTCCCGGA
TCTCCAATTA TGAAATCCTA TGATCTGGTC AATTGGTGGA TAGTCACGTA CGTGTATGAT
CGCATTTCTA TGAGCGATGC TTCATCCTTG CGCAATGGAG CTAGCTCGTA TGGCGAAGGC
GAGTGGGCTC CGTCGCTGCG CTATCACAAT GGCCGCTTCT ACGTGTTATT CAATACGAAC
AACCTTAATG GCGCTTATAT CTACTACACC GATGATATTG AGAATGGTCC TTGGACGAAG
ATTGCCCTTA ATCGGGGATT CCATGATCCG TCATTGTATT TTGATGAGCA AGGGAGTCCT
TGGATTATCT CCGGCGTCAA CCAATATAGG CTGTCCGATG ATTTAACCAC GGTGGTGGAG
AGCCATGAGA ATATCATCTC TGCCGAACAG TTCACTGATG ATCTTGGTGA GACTCCTACC
GGATTTGAAG GATCTCAGAC TTTCAAAATC GGTGATTATT TCTATACTCC AACGATTTAC
TGGGGCAAAG ACGGTCGTAC GGTGATGCTG CTGCGCACCA CTGATTTGCT TGATGGCTCC
AAATACGAAG CCAAAAAGTA TTATCTAGGT GCTTTCGCAC AAGGTAGCCT TGTTGAAGTC
GACAACGGTG ATGGCACGAC GTCTTGGCAT GGATTCTTCT TCCGAGACAC ATATCCGACC
GGACGTATTC CCGGTTTGAT TCCTGCAACG TGGGGTGATG ACGGATGGCC TGTGTTTGGG
GACAATAATC AGGTAAGCGC GTCGGACACC TACGACAAAC TGATTGATTT GCCTGCTGAT
TTGGAGAATC TGGTTCGCCA GCGTTCCCTG GTCAATTCGG ACGATTTTGA TAATGACGCG
CCTCATCAGT CTTATCAGGA TCAGGATTGG TGGACTCTGG AGGAGCCTCC TCAGGTTGAC
GATTCTCTGA TTGGAATCGA GCTGGTGGAC AATGGCGATT TCGAAAACGG GACTGAATCG
TGGACCCCTC AGTGGAATGG TACGCTTACC GCGATTACGG ATGGTTCTCT TTCTGGAACC
ACGAGTCTTG CTGTGACGAA TCGTGGCGAA TACAATGGCG CTGGCCCGGG TCAATCTATG
GATGGAAAAT TGCAGCAGGG CGTGACATAT CGTGCCAGTG CAACGATTCG ATACGACCAT
GAGATGGACG GCGTCGATTC ATCGGCTGTG ACTTCCCACC TGTTTTATGT GGCGATTCAA
TATGCAGACG GCACAATTAA TCGTGTGGCC ACAGGAACAG TGAAACGTGG GGAGACGACT
ACTATCACAG GTGAGTTCTC CATCCCATCC GACGCTAATG TGGAAGGTTC CAAACTCATT
GTCGAAACCG CGTGGGGTGC GGAAGGCACG TGCATGGATT ACGTCATCGA CGATATTTCC
CTGATCGGTC TTGCTGATGA GAAGGAATAT CCGGTCGCCG AAGAATACCA ACCCAATGGT
TCGAATCTTG ATTTGGTATG GGAATGGGGA CATAATCCAG ATAACCGATA TTGGTCTCTC
ACTGATCGTG AAGGCTGGTT GCGTTTGACC AATGGGCACA AGGTTTCCGC CACGGCCAAA
TATATGAAAG GCACTTATGG CGACCTGACA TATTTTGAAA CCGCCCGTAA CGTTTTGTCG
CAGCGTACCT TTGGCGGATC CATGTCTGTG GAAACCCACA TGGATGTCAG TCATATGAAG
GATGGAGACA CCGCAGGCCT CGCTACATAT ACCCGTAGTT TTGCCTATGC CGCTGTGCGT
CAAGAAAATG GACAGCGAAC GTTGGGCGTG GTCAAGCGTG TCTACGACAA TGGCGTGAAG
GACGCGGACG GTAATATCGT TGACGATACG ATTGATCGTG ACGCTGAAGA GGCCTTTGTA
TCGGGCGGCA CAGTGACATT GCCAGATGAT GCGACCAATG TGTGGATCAA GTCGGACAAC
ACACTGGATA ATGCGAGTGG TAAGTTGACG ATTCAGTATT GGTACAGTCT GGACGGTAAG
CAATGGTCCA AGCTTGGCGA CGAGCAGGGG CCGCTGACTT ACGATTGGAG CTTGTCGCAC
TTTAAGGGGT ATCGAATCGG CTTGTTCAAT TACGCCAAGG AGAATACGGG TGGTTATGTC
GATTTTGATT ACTATGACTT GAGCGACGTG TTGACTTCTG ACGGCAAAGC TGTGGATACG
TCTAAGCTGC GTTCGGCCAT TGATCAGGCT GACTCTCTGC AGTCTGCGGA ATATCCTATG
GATGAGTGGG ATAAGATGCT CACGCTACTT GATAAGGCAA AGCAGGCGTT GGCATCCGAT
CCTTCCACGC AAAATGAGGT GGATGCCCCG CAGCGTGCAC TGAGTTTGCA GCTCGCGCAA
TTGGCGGTTG ACCGTCAGTC TGGTGATGGC GGAAATCCTG GTGGTGGTGA TCAGACCGGT
GACGGTAACC AGTCGGGTAA CGGCGATCAG ACCGGTGATG GCGGCCAGCA ACAGTCTTCT
ACTGCTGATG ATAATTCATC TGAACTGTCA TCAACTGGTT CGTCCGTAAC ACCGATGGTG
CTGTCTGCAA TTGCCCTGAT GCTGGCTGGC ATCAGTGTCA TTCGGATACG CCGCTCTTCG
CGCTGA
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| Protein sequence | MLNTDVPDIS VIRVSKDDPN NKDGRDVYYM VSTTMELSPG SPIMKSYDLV NWWIVTYVYD
RISMSDASSL RNGASSYGEG EWAPSLRYHN GRFYVLFNTN NLNGAYIYYT DDIENGPWTK
IALNRGFHDP SLYFDEQGSP WIISGVNQYR LSDDLTTVVE SHENIISAEQ FTDDLGETPT
GFEGSQTFKI GDYFYTPTIY WGKDGRTVML LRTTDLLDGS KYEAKKYYLG AFAQGSLVEV
DNGDGTTSWH GFFFRDTYPT GRIPGLIPAT WGDDGWPVFG DNNQVSASDT YDKLIDLPAD
LENLVRQRSL VNSDDFDNDA PHQSYQDQDW WTLEEPPQVD DSLIGIELVD NGDFENGTES
WTPQWNGTLT AITDGSLSGT TSLAVTNRGE YNGAGPGQSM DGKLQQGVTY RASATIRYDH
EMDGVDSSAV TSHLFYVAIQ YADGTINRVA TGTVKRGETT TITGEFSIPS DANVEGSKLI
VETAWGAEGT CMDYVIDDIS LIGLADEKEY PVAEEYQPNG SNLDLVWEWG HNPDNRYWSL
TDREGWLRLT NGHKVSATAK YMKGTYGDLT YFETARNVLS QRTFGGSMSV ETHMDVSHMK
DGDTAGLATY TRSFAYAAVR QENGQRTLGV VKRVYDNGVK DADGNIVDDT IDRDAEEAFV
SGGTVTLPDD ATNVWIKSDN TLDNASGKLT IQYWYSLDGK QWSKLGDEQG PLTYDWSLSH
FKGYRIGLFN YAKENTGGYV DFDYYDLSDV LTSDGKAVDT SKLRSAIDQA DSLQSAEYPM
DEWDKMLTLL DKAKQALASD PSTQNEVDAP QRALSLQLAQ LAVDRQSGDG GNPGGGDQTG
DGNQSGNGDQ TGDGGQQQSS TADDNSSELS STGSSVTPMV LSAIALMLAG ISVIRIRRSS
R
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