Gene Clim_2011 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_2011 
Symbol 
ID6355515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand- 
Start bp2230417 
End bp2231502 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content52% 
IMG OID642669609 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_001944022 
Protein GI189347493 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGACGT TACAGAAACT CCTCCCGAAA TATACCATAG CTCTTGCCAT TGTGTTTCTT 
GCTACCGTTA CCTACCTGGT AACCAGGGGA AACACGGTCG ATGTCGAAGC GGAGGAGGTG 
ACGTATGCCG AGCTGGTACA GGCGGTCTAT GCGACAGGAT TCGTTGAAGC GGATGCCGTA 
GCCAATCTGA GCGCCGAGCT GTCAGGCACC GTCAGAAGCG TTGGCGCTCT CGAAGGAGAA 
CGGGTGTCTG CCGGCCAGAC AATCATCACT TTAGACTCGC CCCAGCCGGA ACTTGCCGTG 
CGCGAAGCCC GGGCGGCGTA TGATGAGCAG CTTGCTCTGG TTGTCGGGAC GAAGCTGAAA 
TGTATAAGGG CCCGGAATCT GTTCGGTGAA GGAGCCGTAT CGCGCCAGGA TCTTGACGAT 
GCCGAAAAAA ATCGGAAGCA GGCCGAAGAG TTGCTCGAAC AGAAGCGGCT TCGTCTGAAA 
ATTCAGGAAG ACGAACTGAA GAAGCTTACC GTAACGGCTC CGTTCGACGG CGTTCTTGCG 
TTGCAGAGTC TCAAGACTGG CGATTATGTA ACGGCCAATA CGCTTGTGGC AAGGGTGATC 
GATACATCAG GCTATGTCGT CAATGTTGAA ATTGATGAAC TTGATGTTCC CCGAATCCGT 
CCCGGTCAGA AAGCGGTGAT CGTATTTGAT GCCATGCCTG AAAAACGGTT TGATGCCATT 
GTTTCACGTA TTGTTCCCCA GACCGATACC GTTACGAAGA CATCAAAGGT CTATCTGCAG 
TTTACCGCTC CCATACAGGC TGTACAGGCG GGGATGACGG CAACTGCAAA CATTATATAC 
AACACCAGAA GCCGTGCTCT GCTGGTGAGA AAAAGCTCGG TGTTCGATGA GAACCATGTC 
AGTTATGTCT GGAAAATCGA GAACGACAAG CTGAAAAAAC AGGCATTGAA GACCGGAGCA 
GGTGATCTGG CCTTTGTAGA GGTTATCGAT GGCCTCAGAA AAGGCGATCG GGTCATACCG 
GTTCCACAGG AAAGGTTCCG GGAAGGAATG GACGTGAAAA TCGCAGAAAA ACGTATCAGG 
CAGTGA
 
Protein sequence
MQTLQKLLPK YTIALAIVFL ATVTYLVTRG NTVDVEAEEV TYAELVQAVY ATGFVEADAV 
ANLSAELSGT VRSVGALEGE RVSAGQTIIT LDSPQPELAV REARAAYDEQ LALVVGTKLK 
CIRARNLFGE GAVSRQDLDD AEKNRKQAEE LLEQKRLRLK IQEDELKKLT VTAPFDGVLA 
LQSLKTGDYV TANTLVARVI DTSGYVVNVE IDELDVPRIR PGQKAVIVFD AMPEKRFDAI 
VSRIVPQTDT VTKTSKVYLQ FTAPIQAVQA GMTATANIIY NTRSRALLVR KSSVFDENHV 
SYVWKIENDK LKKQALKTGA GDLAFVEVID GLRKGDRVIP VPQERFREGM DVKIAEKRIR 
Q