| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1095 |
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| Symbol | |
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| ID | 6332031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1137966 |
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| End bp | 1140071 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642657381 |
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| Product | ribonuclease R |
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| Protein accession | YP_001931266 |
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| Protein GI | 188997015 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 59 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAAATAA CACAAGCCGC CATCGTAGAT TTTCTTAAAA ATCAAAAAAA ACCTGTCTAT
CTTAAACAAA TTTTAAAAGC CTTTAATTTA GACAAAAAAG AAGATAAAAA ATTAGTCAGA
AGACTGCTTA GAAAACTTCA AAAAAATAAA ATTGTTCTTT ATAAAAACGG TGGTTATATC
TTAAAAAGAG AAATTCAAGA AAAAGAAAAT CTTATAAAAG GAAAAGTAGA AGCACACGAA
AGCGGTTTTG GATTTTTAAT CAGAGAAGAT GGAGAACCAG ACCTTTTTAT TCCACCTATT
GAAATGAAGT ATTTATTTGA TGGAGATATT GTTTTAGCAG AAGAGAAGAT TTACAGAGGA
AAAAAAGAGG CAAAAATTGT AAAAGTCTTA GAAAGAAGAG TAAAAACAGC GGTCGGAAAA
TTAAAGCAAG AAGGTAATAG ATATTTTGTT TATCTGCTTG ACTTTGTAAT ACCGCATAAA
ATATACGTTG ATAAAAAAGA AGCAAAAAAA TATGAACTTG ATAACTACGT AGTAGTTGAA
ATTTTAAGAT ATCCAGAGCC AAAAGTAGAA GCAAAAGGAA GAATAATAAA AGACCTTGGA
AAAGTCAAAA ACACCCAAAC TGTCGCAGAA ATAGTAGCAA GAAAGTATGA CTTACCACTT
ACCCACTCTC CGGAGGCCTT AAAAGAAGCA GAAAAACTTC CTTCTGTTGT AAAAATTACA
AAAAATAGAA AAGACCTAAC AAAACAGATA TGTTTTACCA TAGACCCGGA AAGTGCAAGA
GACCATGACG ACGCAGTAGC GATAGAAAAA GAAGGAGACA AATATAGACT ATATGTTCAC
ATTGCTGATG TCTCCCACTA CGTTAAAGAA GGTTCTGTCA TAGATAAAGA AGCATTCCAA
AGAGGAAATA CCTACTACCT TCCGGAAAGA GCGCTTCATA TGCTACCGGA AAGGCTTGCA
AGCCAGCTTT GTAGTTTAAA ACCTCGCGAA AAAAGGTATG CATTCACATG CGAGATGCTT
ATAGACAAAA AAGGGAACGT GGTTGAGTAT GATATATATG AAAGCGTTAT AGAAAGCAAA
GCAAAGCTTA CATACGACCA AGCACTTGGA ATAATCCTTG GACAGCCAGA GCTTGAAAAA
GCCTTTCCAT ACTTAGTCAA GCCACTTAAA CATATGAAAG AGCTTGCAGA AATTTTAATG
AAAGCCAAAG AAAAAAGAGG AAGTATAGAC TTTGACATGC CGGAGTCTCA AATACTGTTT
GACCAATACG GTAATCCTTA TGATGTTGTA CCTTACGAAA GACATTTAGC CAACAGAATC
ATAGAAGAGT TTATGATAAT AGCAAACGAA ACAGTCGCTA AACATATGGA AAAAAACGGA
TATCCATTTA TCTATAGGGT TCATGAAAAA CCAAAATTAG AAAAAGTTAT GGCATTTGTA
GATTTAATAG CAGGTCTTGG CTACAAAGTA GAGTATCCAA AAAAAGATGT AGACTCTAAA
TTTATTCAAA AAATTATAGA AATGGCAGTA GGAACTCCGG AAGAGTCATT GGTTAGATTC
TTGGCTCTGA GAACGATGAA GCAGGCAAGA TACTCACCAG AAAATATAGG ACACTTTGGC
CTTGCTTCAG AATGTTATAC TCATTTTACA TCTCCGATAC GAAGATATGC TGACGTGTGG
GTTCATAGAC TTCTTAAAAA AGCAATCAAA AAGAAATTTA CAAAGAAAGA TATGGAAGAA
TTGCCTAAGA AGTTAGATAT AATTGCAAAA CAATGCTCAG AAAGAGAAAG GGTAGCAGAT
GATGCAGAAA GAGATGCCTT AGACATCTTA AAATTAAGAA TTCTCAAAGA TAAAGTTGGA
GAAAAGTTTG AAGGTATCAT TACAGGCGTT ATGGCTGTTG GTTTATTTAT AGAAATAGAA
AGATATATAA TTGAAGGTTT AGTTCCGATA GACTCTCTGC CCGGTAAATT CAAATACGAT
GAAAAAAACC ATCAACTTAT AGGCGATAAG ATGAAGTTTA GACTTGGGGA TAAAGTTTTA
GTTGAAATTG TAAAAGTTGA TGAAGATACT AAAAGGATAG ATTTAAAGTT GGTGGAAAAG
TTATAG
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| Protein sequence | MEITQAAIVD FLKNQKKPVY LKQILKAFNL DKKEDKKLVR RLLRKLQKNK IVLYKNGGYI
LKREIQEKEN LIKGKVEAHE SGFGFLIRED GEPDLFIPPI EMKYLFDGDI VLAEEKIYRG
KKEAKIVKVL ERRVKTAVGK LKQEGNRYFV YLLDFVIPHK IYVDKKEAKK YELDNYVVVE
ILRYPEPKVE AKGRIIKDLG KVKNTQTVAE IVARKYDLPL THSPEALKEA EKLPSVVKIT
KNRKDLTKQI CFTIDPESAR DHDDAVAIEK EGDKYRLYVH IADVSHYVKE GSVIDKEAFQ
RGNTYYLPER ALHMLPERLA SQLCSLKPRE KRYAFTCEML IDKKGNVVEY DIYESVIESK
AKLTYDQALG IILGQPELEK AFPYLVKPLK HMKELAEILM KAKEKRGSID FDMPESQILF
DQYGNPYDVV PYERHLANRI IEEFMIIANE TVAKHMEKNG YPFIYRVHEK PKLEKVMAFV
DLIAGLGYKV EYPKKDVDSK FIQKIIEMAV GTPEESLVRF LALRTMKQAR YSPENIGHFG
LASECYTHFT SPIRRYADVW VHRLLKKAIK KKFTKKDMEE LPKKLDIIAK QCSERERVAD
DAERDALDIL KLRILKDKVG EKFEGIITGV MAVGLFIEIE RYIIEGLVPI DSLPGKFKYD
EKNHQLIGDK MKFRLGDKVL VEIVKVDEDT KRIDLKLVEK L
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