Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_04790 |
Symbol | |
ID | 6304947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | - |
Start bp | 1429466 |
End bp | 1431847 |
Gene Length | 2382 bp |
Protein Length | 793 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642638720 |
Product | TonB-dependent receptor |
Protein accession | YP_001912597 |
Protein GI | 188575668 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0241337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTTTT CATCATCCTG CTACGCCCTC TCGCTCGCCG TCGCTGCCGT GCTGCTGGCA CCGGATGGCC GCACGCAGAC CGTCACGCCT GCATCGGGCA ATCAGGACGC CACCACGCTG GATGCGGTCA TCGTCAGTGG TACCGCGCGC TTCAAAGGCC TGGCCAAACG CGACGCCAGT TTTTCGATCA CCACGGCCAG CCCCGAGCAG ATCCAACAAG CGGTGCCGCA GAGCACCGCA GATCTGCTCA AGATCGTGCC CGGCGTGTGG GCCGAGCCCA GCGGTGGCGG CACCGGCGCC AACATCTTCG TGCGTGGCAT GCCCTCCGAA GGCGATGCGC CGTTCGTGAC CATGCAACTG GATGGCTCGC CGCTGTTCCC GCCGCCGACC TTGTCGTTCC TGGAGAATTC CACGCTGTTG CGCGTCGACG ATACGGTCGA ACGCATGGAA GTGCTGCGTG GTGGCTCCAG CCCCATCTTC TCCAACGGCC AGCCTGGCTT GACCGTCAAT TTCATCCAGA AAAAAGGCCA GGATGCACCC GAAGGCAGCG TGCGCCTGAC CGGCGGCAAC ACTGCATTGC GCCGCATCGA TGTGTTCAAC AGCGGGCCGA TGGGCAATGG CTGGTACTAC AGCGTGGGCG GTTTTTTTCG CGACACCGAC GGCGTGCGCG ACCCGCAGTT CTCCGCCGAC AAGGGCGGCC AGTTCAGCGC CACCTTGAGC AAGCGCTGGG ACAGCGGCGA GCTGTCGCTC TATGCGCGCC ACACCGACGA TAACAACGCC TTCTACACCG CGATTCCGTT GCTCTCGCGC AACAACGGCA ACGCTCTTTC CAGCTTTCCC GGCTTGAACG CGCAAACCGG CACCCTGCTC GGCCGCGACT TCCGCACTGT GGATCTTCTC GTCGGTCCCA ATGGCCAGAC GCTGCGACGC GATCTGGCCG ATGGCCGCGG CGTCGACATC GACGTGTTCG GCGGCGAATG GAACTGGGAG CGCGGCGGCT GGACCGTGGC CGACCGCTTC AACGTGATGA ACGGCAGCGC GCCAACCTAC GCGCTATTTA CCGGCGATGC GCCACAACGC CTGGGCGATT TCATCGCCGG CTACGGCAGC AGCGGTAGCG CCAGCTACAC CAATGGAGGA GGCGCGGTGG ATGCGAATCA GCAGGTGCTC GAAGCCGGTT GGTGGTCGGT GGACAAACGC CTGAATTCCT TGACCAACGA TCTGCGCCTG AGCCGCGAGT TGTTTGCCGG CAACACGCTG ACCGTAGGTG CGTATGACGC CAAGTATTCC TCTGCCGACA CCTGGTACCT GGGCAACACC CTGTTGCTGA CCGCGCAAAA CAACGCACGC CGCATCGATG TGGCATTGGA CGATGGCCGG CAGCCCACGC GCCAGGGTTT CACCAGCACT GCCTTCTTCA ACCTGCGCGC CAAGTACAAC GGCGAAAACA TCGCCGCATT CGTTGCCGAC GAGTGGGAGC TGAGCGAGCG TCTGCGCCTG GACCTGGGCG CGCGCTACGA GTGCCAGAGC GTCACCGGCG ATGTGCACGA CACCGCCACT GTGGATCTGG ATGGCAACCC GGCCACGCTA TACGACAACG CCACCTCGCT GGCGCTTGCG ACCACGCGGC GCATCGATCA AGACGATGAA GCGTTCTCGT GGACGGCCGG CGTGAACTTC ACGCTCGATC GGAACAACAG CCTGTTTGTG CGGGTCAACT CCGGGGTGAA GTTTCCCGGC TTCGACAACC TGCGCGATGG CCAGAACCGC GTGCAGGACG TGGATCAATA CGAGCTTGGC GTGAAGTCCG GCACCAGTGC CTACGACCTG TATCTCACCG CGTTCTACAA CACCTTTAAA AATTCGCCAT TCCAGGCATT TCTGGCCAAT GGCCAGAACT TCACCGCGGT CGGCGATTCG CGCGCACGCG GCCTGGAAGT CGAAGGCGCG ATTCGGCCAT TGGGCGGGTT CGAACTGGCT GGCACCGGGG TGTGGCTGGA TGCGAAATAC CGCAACTATC GCGAGTTCAC CGGCAACCAG GTGATGCGCC AGCCCAAGCG CCAGTTCCGC ATCACGCCCA GCTATTACTG GATGCTACCG TTCGGCGATC TCAAGGTGTT TGCCACCTAT TCGTACATCG GCGAGCGCTT CGCGGATCTG GCCAACAGCC AGCGCCTGCC CTCGTACGAC ATGCTGGAGC TGGGCGCCAA CCTGCATGTG GGCGAACACT GGGAAGTCAC CGCCAGCGGC AGCAACGTCA CCGACACGCT GGGCCTGACC GAAGGCAACG TGCGCGTGCC TGGTGCGGCC ACCGATGGTG TCTTCATGGG CCGGCCGATT GCCGGGCGGC AGTACCAGAT GTCGGTGGCG TACCGCTGGT AG
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Protein sequence | MRFSSSCYAL SLAVAAVLLA PDGRTQTVTP ASGNQDATTL DAVIVSGTAR FKGLAKRDAS FSITTASPEQ IQQAVPQSTA DLLKIVPGVW AEPSGGGTGA NIFVRGMPSE GDAPFVTMQL DGSPLFPPPT LSFLENSTLL RVDDTVERME VLRGGSSPIF SNGQPGLTVN FIQKKGQDAP EGSVRLTGGN TALRRIDVFN SGPMGNGWYY SVGGFFRDTD GVRDPQFSAD KGGQFSATLS KRWDSGELSL YARHTDDNNA FYTAIPLLSR NNGNALSSFP GLNAQTGTLL GRDFRTVDLL VGPNGQTLRR DLADGRGVDI DVFGGEWNWE RGGWTVADRF NVMNGSAPTY ALFTGDAPQR LGDFIAGYGS SGSASYTNGG GAVDANQQVL EAGWWSVDKR LNSLTNDLRL SRELFAGNTL TVGAYDAKYS SADTWYLGNT LLLTAQNNAR RIDVALDDGR QPTRQGFTST AFFNLRAKYN GENIAAFVAD EWELSERLRL DLGARYECQS VTGDVHDTAT VDLDGNPATL YDNATSLALA TTRRIDQDDE AFSWTAGVNF TLDRNNSLFV RVNSGVKFPG FDNLRDGQNR VQDVDQYELG VKSGTSAYDL YLTAFYNTFK NSPFQAFLAN GQNFTAVGDS RARGLEVEGA IRPLGGFELA GTGVWLDAKY RNYREFTGNQ VMRQPKRQFR ITPSYYWMLP FGDLKVFATY SYIGERFADL ANSQRLPSYD MLELGANLHV GEHWEVTASG SNVTDTLGLT EGNVRVPGAA TDGVFMGRPI AGRQYQMSVA YRW
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