| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3337 |
|---|
| Symbol | mdoD |
|---|
| ID | 6289463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3492117 |
|---|
| End bp | 3493799 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642626922 |
|---|
| Product | glucan biosynthesis protein D |
|---|
| Protein accession | YP_001900891 |
|---|
| Protein GI | 187930404 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCTG GGCGTGGGTT GTGCGAAGAT GAATCACCCC TGGCTCATCC CCTGGTCCTG
CCCCCATCCA TGCACCGTCG CGACCTGCTC AAGCAGTTGG CCGCCGGGCT GCTTGCCCTG
GCTCCTGGTT TGTCCCGCAG CGCCACGCCC GGCACCGCCG CTGGCGCCCC CGAACCGTTT
GACGAAGCCC GCCTGCTGGC GCGTGCCCGG GCCTTGGCCA CAAGGCCATA CCGGCCCCGC
AGCACGCAGT TGCCCAAGCC GCTGGTCACG CTTGGCTGGG ACGGCTATCA ATCGATTGGC
TATCGCCCCG ATCACGCATT GTGGGCCGGC CAGCACTTGC CGTTCGAGGC CAAGTTCTTC
CACCTCGGGC TGTTCTTCAA GTCGGCTGTC CAGATGCACG AGGTGGTGGA CGGCCATGCC
CGCCTGATTG CCTACGACCC GGCCATGTTC GATTACGGCA AGAGCGGACT GGATCACCAG
GCGCTGCCGG CCGATCTCGG TTTCGCCGGT TTTCGGCTGA CGACCAAGGC GGACCCGACG
CGCGATGTGA CGGCCTTCCT GGGTGCCAGC TACTTTCGCG CCGTCGGCGG GCAGTGGCAA
TACGGCATGT CGGCGCGCGG CCTGGCGATT GATACGGGGT TGCCTCGCGC AGAAGAGTTT
CCGGACTTCA CTGAATTCTG GCTGGTGCGC CCGGCCGCCG ATGCCGATAC GGCGCGCGTC
TATGCGCTGC TCGATTCTCC GAGCGTGGCC GGCATCTACC GCTTCGACAT CCGCCCCGGC
GACACGCTCG TGATGGACGT GGCCGCCACG CTCTACGTGC GCAAGCCGAT CGAGCGTCTG
GGCATCGCGC CGCTGACCAG CATGTTCCTC TACGGCGAGA ACGACCGCAC CGACCGCGCC
GGCGATCGCC ATAGCGCCGC ACGTCGCTGG CGCGCATCGG ACTGGCGCCC GGAAATCCAT
GATTCCGATG GCCTGGCCAT CTGGCGTGGC TCGGGCGAGT GGATCTGGCG GCCGCTGGCC
AATCCGCCCG TGCTGCGCAG CCAGCGCTTT GCCGACGACA GCCCGCGTGG CTTCGGCCTG
CTGCAGCGCG ATCGCAATCC CGATCATTAC CAGGATGACG GCGTGTTCTA CGAGAAGCGC
CCGAGCGTGT GGGTCGAGCC CACGCATGAC TGGGGCGAGG GCGCGGTCGA ATTGGTGGAG
CTGTCGGCCA ACGATGAAAC CTTCGACAAC ATCGTCGCCT TCTGGCGGCC CGCCGTTGCG
CCGCATGCCG GGCAGGAACT GGCGTTCGGT TATCGGCTGA CGTGGGGCGC GCAGCCCGCA
GCGGCCTCGC CACTGGCGCG GGTGGTGGCG ACGCGTACGG GCATTGGCGG CGTGGTGGGG
CAGCCGCGCA AATACTTCTC GTGGCGGTTT GTCGTCGACT TTGCCGGCGG TGAGCTGTCG
CGGCTGGGGC GCAGCACGGC GGGGTCGACT GTGGAGCCTG TCATACGCGC CTCGCGCGGG
CGGGTGGAGA TTGCGTCGGC GCGGCCGCTG GCGAGCATCG ATGGTGTCCG GGCAATGTTT
GATGTGGTGC CGGATGCGAG CAATGCGCCG ATTGAGTTGT TGCTGACGTT GCAGTCGGGG
GAGCGGTTGC TTTCTGAGAC TTGGGCGTAT CAGTGGACGC CGCCGGTGGA TCGAGGCGTG
TGA
|
|---|
| Protein sequence | MLPGRGLCED ESPLAHPLVL PPSMHRRDLL KQLAAGLLAL APGLSRSATP GTAAGAPEPF
DEARLLARAR ALATRPYRPR STQLPKPLVT LGWDGYQSIG YRPDHALWAG QHLPFEAKFF
HLGLFFKSAV QMHEVVDGHA RLIAYDPAMF DYGKSGLDHQ ALPADLGFAG FRLTTKADPT
RDVTAFLGAS YFRAVGGQWQ YGMSARGLAI DTGLPRAEEF PDFTEFWLVR PAADADTARV
YALLDSPSVA GIYRFDIRPG DTLVMDVAAT LYVRKPIERL GIAPLTSMFL YGENDRTDRA
GDRHSAARRW RASDWRPEIH DSDGLAIWRG SGEWIWRPLA NPPVLRSQRF ADDSPRGFGL
LQRDRNPDHY QDDGVFYEKR PSVWVEPTHD WGEGAVELVE LSANDETFDN IVAFWRPAVA
PHAGQELAFG YRLTWGAQPA AASPLARVVA TRTGIGGVVG QPRKYFSWRF VVDFAGGELS
RLGRSTAGST VEPVIRASRG RVEIASARPL ASIDGVRAMF DVVPDASNAP IELLLTLQSG
ERLLSETWAY QWTPPVDRGV
|
|---|
| |