| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0058 |
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| Symbol | |
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| ID | 6289195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 70422 |
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| End bp | 72161 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642623631 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001897655 |
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| Protein GI | 187927168 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGACGC TGTGGATTCG ACGCGCTGAC GGTGGTGGTG CATCCCTTGT TTCGTCCCCT
GCCGGGGCCG ACTTACTTTC TTTGTCTTGC CAAAGAAAGG TAAGCAAAGA AAGGCGCGCC
CGAGATGGCG ACTTCCCCTT GAATTTATGT AACCGGGCGG AGACGGGGAA AACTCGCTCC
GCTCAGACAG TTCCCCGTCT CTTTTCCGCC CGCTTACAGA AATTCAAGGC GCCATCTAGG
GCAGGGTACG GCCAAACCGT CGGTGGGCAC CTGTTGGCGT TGGGGCGAGC GTTGAGGTGT
GGTGAGCGGG CGGCTGGGGC TGTGTTGATT GCCGCGCTGG CTGTGAGCGG CTGTGCCGTC
GGTCCCGATT TCAAAGCGCC CGCGGGGCCT GCGGCTACCG GCTATTCCGC GCAGCCTGTT
TCGCGCGAAA CCGCATCCGC GCCCGTTGTT GGCGGCGAAG CGCAGCATCT CGTCGATGCC
AACGTGCCGG CCGATTGGTG GCACCTGTTC CGATCCCCTG CGCTGGATGC GTTGGTGGAC
GAGGCGTTGC GTGCGAGCCC GTCCGTCGCG CAGGCGGAGG CGCGCTTGCG TCAGGCGCAG
GCCGAAGCGC AGGCGCAGTT CGGCTATGCG TTGCCGTCGG TGGATGGCAC CGTGTCGGCG
GTGCGTCAGC AGATCAACCC AGAGGCGTTC GGATTCAACA CGCCCAAGCC AGGGCCGTTC
ACGTTGTATT CGGCGTCGCT GTCGGTGTCG TATGCGCTGG ACATTTTTGG CGGCGTGCGC
CGGGCGCTGG AGGCATCGCG CGCGCAGGTC GATACGCAGC GTTATGAACT GGAGGCGGCG
CGCCTGTCTC TGGCAGGCAA TGTGGTGACG ACGGCGGTGC GGATTGCCGC GCTGGATGCG
CAGATCGCGA CCACGCAGCG ATTGGCGGCC GAGCAGCGCA AGCAATTGGA GATCACCGAG
CGGAGGTTGA GCGTGGGCGG CGTCGCGCAG GTCGATGCGT TCTCGCAGCG CACGCTCGTC
GCGCAGACCG ACGCCACGTT GCCGCCGCTC GCGCAACAGG CTGCGCAGCA GCGGCACCGT
CTATCGGTAT TGCTGGGCCG CGAACCCGGT GCCGGGTTGC CTGACCTGCC GTCGCTCGAC
GCGCTGCATC TGCCCGACCC GCTGCCGGTG TCGCTGCCAT CCACGCTCGC GCAGCGCCGC
CCCGACATCC GTGCTGCCGA AGCGATGTGG CACGAAGCCA GCGCCAACGT GGGCGTGGCT
ACGGCCAATT TGTTCCCGCG TATCACCCTG TCCGCCGGGC TGGGTTCGGA AGCCACCAGC
TTCCGCAACC TCCTTGGCGC TGGGTCAAGC ATCTGGAATC TGGGCGCCGG CCTCACGCAA
CCGCTCTTCC ACGGCGGCAC TCTGCGCGCA AAAAAACGCG AAGCCGAAGC GGCCTACGAC
GCTGCCGGCG CCGCCTACAA ACAAGCCGTA TTGCAAGGGT TGCAAGAAGT GGCCGACACC
CTGCACGCCG TCAACAACGA CGCCCAAACG CTGCAGGCCC GAGCGCTGGC AACCGACCAG
GCACAACAGA CCCTGCGCGC CGCCCAAGCC CGCCACGCCG CCGGCGGCAT CAGCACGCTA
ACGTTGCTGG ACGCCCAGCG CCAGGTCGAC CAGGCCACAC TGCAACAGGT GCAGAGCCAG
GCGGATCGGT TGCTGGATTC CGCCGCGCTC ATGCAGGCGT TGGGTGGCGG TTGGCAATAA
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| Protein sequence | MWTLWIRRAD GGGASLVSSP AGADLLSLSC QRKVSKERRA RDGDFPLNLC NRAETGKTRS
AQTVPRLFSA RLQKFKAPSR AGYGQTVGGH LLALGRALRC GERAAGAVLI AALAVSGCAV
GPDFKAPAGP AATGYSAQPV SRETASAPVV GGEAQHLVDA NVPADWWHLF RSPALDALVD
EALRASPSVA QAEARLRQAQ AEAQAQFGYA LPSVDGTVSA VRQQINPEAF GFNTPKPGPF
TLYSASLSVS YALDIFGGVR RALEASRAQV DTQRYELEAA RLSLAGNVVT TAVRIAALDA
QIATTQRLAA EQRKQLEITE RRLSVGGVAQ VDAFSQRTLV AQTDATLPPL AQQAAQQRHR
LSVLLGREPG AGLPDLPSLD ALHLPDPLPV SLPSTLAQRR PDIRAAEAMW HEASANVGVA
TANLFPRITL SAGLGSEATS FRNLLGAGSS IWNLGAGLTQ PLFHGGTLRA KKREAEAAYD
AAGAAYKQAV LQGLQEVADT LHAVNNDAQT LQARALATDQ AQQTLRAAQA RHAAGGISTL
TLLDAQRQVD QATLQQVQSQ ADRLLDSAAL MQALGGGWQ
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