| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3936 |
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| Symbol | |
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| ID | 6282046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 4409429 |
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| End bp | 4411804 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642623523 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001897547 |
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| Protein GI | 187925905 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.765741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAAGAA ATCGTATGGC TTTGCGTCGC GTCGCAACGG CGCTGCTGGT GGCTGGCTTG
ATCACCGCGC AGACAGCACA GGCACAGGTG ACACTGAACT TCGTCAACGC GGACATCGAC
CAGGTGGCCA AGGCGATTGG CGCGGCAACC GGCAAAACGA TTATCGTCGA CCCGCGTGTG
AAAGGTCAGT TGAATCTCGT GTCGGAAAAC GCAGTGCCCG AAGATCAGGC GCTGAAAACC
TTGCAGTCCG CGTTGCGCAT GCAGGGCTTC GCGCTCGTGC AGGATCACGG CGTACTGAAA
GTCGTGCCCG AGGCCGACGC GAAGCTGCAA GGCGTGCCGA CCTACGTCGG CAATACGCCA
GTCGCGCGCG GCGACCAGGT GGTCACGCAG GTATTCGTTC TGAAGAATGA ATCGGCCAAC
AATCTGTTGC CGGTGCTGCG TCCGCTCATC TCGCCGAACA ATACCGTGGC GGCCTACCCC
GCCAACAACA CGATTGTAGT TACCGACTAC GCCGACAACG TGCGGCGGAT TGCCCAGATC
ATCCAGGGCG TGGATTCCGC CGCGGGCCAG TCGGTGTCGG TGGTGCAGCT GAAGAACGCC
AACGCGATCG ACATCGCTAC GCAACTCAAC AAGATGCTCG ACCCGGGTTC GATCGGCAGC
ACGGACGCGA CGCTGAAAGT GTCGGTCACC GCCGACCCGC GCACCAACTC GCTGCTGATC
CGCGCGTCGA ACGGCGCGCG CCTCGCGGCG GCGAGGACGC TGGCGAAAGA ACTCGATACG
CCGACCACCA TGCCCGGCAA CATTCACGTC GTGCCGCTGC GCAACGCGGA CGCGACGAAG
CTCGCCAAGA CCTTGCGCGG CATGTTCGGC AAAGGTGGTG ACAGCGGCTC GTCGAGTAAC
TCGAACGACG CGAATTCGTT CAACCAGAAC AACAGCGGCG GCATTGGAGG CAACAATTCG
ACGGGCTCGT CGGGTACGCC GCCGCTGCCG TCGGGCGGAC TCGGCAGCAG CTCGTTGGCA
TCGCCGATGG GCGGCAGCGG CAGTGGCGGC GGATACGGCG CGGGCGGGTC CAACAACGGC
GGCTTCGGCA ACGACAAGGA AAAAAGCGAC GACAATCAGC AAGGCGGCAT GATCCAGGCG
GATTCCGCGA CCAACTCGCT GATCATCACG GCGGCCGAGC CGGTGTACCG CAATCTGCGC
GCGGTGATCG ACCAGCTCGA CGCACGTCGC GCACAGGTCT ATCTCGAGGC GCTGATCGTC
GAGTTGAATT CGAACACGAG CGGCAACCTC GGTATTCAGT GGCAAGTGGC GAACAACTCG
ATTTTCGCCG GCACCAATCT GCAGACCGGC AGCAGCAACA GCATCGTCAA TCTGACCGCG
GCGGCCGTGG CGGCCGGGTC CACCGGCGGC CTTGCCGGCG CGCTCGGAAA CGGGACGCTC
CAGCAAGGGT TGAATATCGG CTGGATTCAC AACATCTTCG GTGTGCAAGG ACTCGGCGCG
CTGCTTCAGG CGCTCTCGCA AACCGCCGAT GCGAACGTGC TGTCCACGCC TAATCTCATC
ACGCTCGACA ACGAGGAAGC GAAGATCGTC GTGGGTACGA ACGTGCCTAT TCAGACGGGT
TCGTATTCGA ATCTGACGAG CGCGACGGCC ACTTCGGCGT TCAATACCTA CGACCGCGTC
GACGTCGGTC TGACGCTGCA CGTGAAGCCG CAAATCACGG ACGGCGGCAT TCTCAAGCTG
CAGCTCTACA CTGAAGACTC GGCGATCGTC ACCGGCACGA ACAACGCGGC GACCAACCCG
GCCGGCCCGG AATTCACCAA GCGTTCGATC CAGTCGACGG TGCTCGCCGA TAACGGTGAG
ATCATCGTGC TGGGCGGCTT GATGCAGGAC AACTACCAGG TCAGCAACAG CAAGGTGCCG
CTGCTCGGCG ATATTCCGTG GATCGGCCAG CTGTTCCGCT CGGAACAGAA GACCCGCAAC
AAGACCAACC TGATGGTGTT CCTGCGGCCT GTGATCATCA GCGATCGTGG TACGGCTCAG
GCCGTGACGT CGAATCGCTA CGACTACATT CAGGGCGTGC AGGGTGCGTA CAAGCAGGAC
AACAACCTGA TGAAGGACAA CGACGATCCG GTGGTTCCGC CGATGCCGAT CGGTCCGAGC
CAAGGCGGTT CACCCGCGAT GAATCTGTTC GATCTCGACA AGATGCGCCG GCAGCAGCTG
GCGCCGCCGC CGGGTAACGG TGGAGCTGTC ACGAACGGCG CCGCGGCAAC CAACGGCACC
GCCGTGCAGA GTAGTCCGGC CACCGTCGGG CCCGCCATAC AGAGCAGCCC CGTCACGGTG
ACGCCTTCCA CGGCGTCGCC TGGAGTGCGG CCGTGA
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| Protein sequence | MRRNRMALRR VATALLVAGL ITAQTAQAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV
KGQLNLVSEN AVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYVGNTP
VARGDQVVTQ VFVLKNESAN NLLPVLRPLI SPNNTVAAYP ANNTIVVTDY ADNVRRIAQI
IQGVDSAAGQ SVSVVQLKNA NAIDIATQLN KMLDPGSIGS TDATLKVSVT ADPRTNSLLI
RASNGARLAA ARTLAKELDT PTTMPGNIHV VPLRNADATK LAKTLRGMFG KGGDSGSSSN
SNDANSFNQN NSGGIGGNNS TGSSGTPPLP SGGLGSSSLA SPMGGSGSGG GYGAGGSNNG
GFGNDKEKSD DNQQGGMIQA DSATNSLIIT AAEPVYRNLR AVIDQLDARR AQVYLEALIV
ELNSNTSGNL GIQWQVANNS IFAGTNLQTG SSNSIVNLTA AAVAAGSTGG LAGALGNGTL
QQGLNIGWIH NIFGVQGLGA LLQALSQTAD ANVLSTPNLI TLDNEEAKIV VGTNVPIQTG
SYSNLTSATA TSAFNTYDRV DVGLTLHVKP QITDGGILKL QLYTEDSAIV TGTNNAATNP
AGPEFTKRSI QSTVLADNGE IIVLGGLMQD NYQVSNSKVP LLGDIPWIGQ LFRSEQKTRN
KTNLMVFLRP VIISDRGTAQ AVTSNRYDYI QGVQGAYKQD NNLMKDNDDP VVPPMPIGPS
QGGSPAMNLF DLDKMRRQQL APPPGNGGAV TNGAAATNGT AVQSSPATVG PAIQSSPVTV
TPSTASPGVR P
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