Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_0072 |
Symbol | |
ID | 6284344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 89774 |
End bp | 90931 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642619657 |
Product | porin Gram-negative type |
Protein accession | YP_001893746 |
Protein GI | 187922104 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAGTA TAAGGGTAAT CCTGAGTACG TTGATCACAA CGGCGGCCGC ACTTGTATGC CAGTCTGGCG CTCACGCACA AAGTAGCGTC GATCTGTACG GTGTACTGAT GAGTGGTTTC ATCTGGACCA ACAACGTCGC TGGTGGCAAG AGTGTCAGCC CTGCCGAGGG GCCTAGTCGC TGGGGACTGA AGGGTAACGA GGACCTGGGT GGCGGGACGA AAGCGGTCTT TACCCTGGAA AGCGGTTTTG CGATGAGTAG CGGCCAGTCG TTTCAGGGCG GCCGCCTGTT CGGCCGCCAG GCTTTCGTTG GTCTGTCGAA TGATGCGTTG GGAACGTTCA CCCTTGGCCG TCAATACGAT TTTGCCAACG ACTGGCTCGC GCAGAGCAGC GCGGTCTATC GGTGGAACGG GTATTTCGCT CACCCGGGAG ACAACGACAA TTTCAATTGG CAATTCCGCG TAAACAACGC GGTGAAGTAC CAAAGTCCCG TGGTAGGTGG ACTGCAGATC GGCGCAATGT ATAGCTTCGG TGGCGTAGCT GGCAGCTTCG GAAACGAGAG CGCGATGAGC TTCGGCGCGA AATACGAAAA CGGACCCGCA AAGATCCAGG CCGCTTATTT CCATATGAAC CATCCTGCGC TCGCGGCATC CGAGGGCAAC TGGAATACGA TGCTGTTCCC ACATATATCG GCTGCCTCAC CAAATGAGGC AAACGCGCTG AACCCGCAGA GCATGGATAT CTACGGCATT GGTGGAACGT ACCAGATCGG GAAGACCACA CTCGGGTTGC TATGGAGTCA CAGCGACTAC GACAAACTGG GTGATCAGGG TGATGGACTC GCTGACGCGG ATGCGCGCTT CGACAACATC GAGGCGAACA TCGCATACAA CCTGACGCCG CAGGTCCAGT TTGTTGGCGC GTATGCGTAC ACAATTGGCA AGGTCCATCC GACGGACTTC GCGCCACAGT ATCACCAGGT TGACGTCGGC GTAAATTACT TCGTGTCACA CCGAACGATC CTTTACCTCG CCGGAATCTA TCAACGTGCA GCGGGAGACG CGACATACGC GAATATCGAA TGCGCGGGAT CCTCGTGTGC AGCGAGCAGC TCCAGGAACC AGGTTTCGGC CCTGGCCGGT ATTTTCCATA TGTTCTAG
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Protein sequence | MRSIRVILST LITTAAALVC QSGAHAQSSV DLYGVLMSGF IWTNNVAGGK SVSPAEGPSR WGLKGNEDLG GGTKAVFTLE SGFAMSSGQS FQGGRLFGRQ AFVGLSNDAL GTFTLGRQYD FANDWLAQSS AVYRWNGYFA HPGDNDNFNW QFRVNNAVKY QSPVVGGLQI GAMYSFGGVA GSFGNESAMS FGAKYENGPA KIQAAYFHMN HPALAASEGN WNTMLFPHIS AASPNEANAL NPQSMDIYGI GGTYQIGKTT LGLLWSHSDY DKLGDQGDGL ADADARFDNI EANIAYNLTP QVQFVGAYAY TIGKVHPTDF APQYHQVDVG VNYFVSHRTI LYLAGIYQRA AGDATYANIE CAGSSCAASS SRNQVSALAG IFHMF
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