| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0006 |
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| Symbol | |
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| ID | 6280753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 7686 |
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| End bp | 10244 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642619593 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001893682 |
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| Protein GI | 187922040 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0359048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACGC AAGACGGGAT AAGCGCCATC ACGGGCGGAT TAATTCAGCA AGACCGCCTG
CTTAAACTGG ATACGCCGCT GGGGACAAAC GCACTGGTGC CGCAGCGTGC GGTAGGCCGT
TCGCGTATTG GCCGTCATTT CGAATTCACC GTCGACGTGG TATCCACGTC GAGCACCGTC
GAGCTCAAAA CCCTGATCGC ACAGCCGGTC ACACTGTGGA TCCAGCAGGC CGACAAGTCC
TATCTGCCGC ACAACGGCTA TGTGCACACC GCACGGCGCC TCGGATCGGA TAGTGGGCTC
ACAAGCTATC AATTGGGCTT CGCGTCGTGG ATGCACTTCC TGAAGTTTCG CCGCGACCAG
CGCATCTGGC AGGACAAGAG CGTAGACGAA ATCGTGACGG ACGTATTCAA TGCGCATCCG
CAGGCGCAAG GGATGTTTCA GTTCGCCTTG TCACAGCCGC TGCCGTCCCG TTCATACTGC
CGTCAGGATG AAGACGACTG GAACTTCGCG CACCGGCTGC TGGAGTCGGA AGGTCTGTTT
GGTCTCTGGC AACAGGCGCA GGACGGCAAA TCGCATACGC TGGTCATCAC GGACAGGTTG
GCGACCGCGA AAGGCATGTC TCCGGAAGCG GTCAAGTTCT ACCGGGCGGG CACCGGCAGC
GAGACTGACG CGTTGACGCA GTGGTCGGGC ACGCGCACGT TGCAGAGTAC AACGCTCACC
ACGCGTACAT TCGACTACAA AAGTCCCTCA ACTCAGTTCA ACCCGAAAGG CACCAACGTA
CCGACCATGC CCAACCAGGG CTCGTTGCCG GATCAGGCTG AAGTGTATGA GTACACGGGC
GCATACACCT ACCCGAAGCA AGATCGCGGC GACCAACTGT CCAAATTGCG GATGGAGGAA
TGGGAATCAC GCGCGAAGCG CTTCCATGGC GAGGGTGGGT TGCGAGGGAT CGACGCCGGA
CTGCGCTTTA CGCTGACCGG CCATCCCGAT CACGACCGAG ACGCGGCCGA TCAGAAAGAA
TTCGCCGTGA TCGAGACCGC GTGGGTAATC GAAAACAATT TGCCGATCGG CGGCCCGGCG
GCTGGCTTTC CGAACAGTTT GCAAACAACA CTGCTGCAGG TGCGCGAAAC CCACGCGGGC
GTTAGCACAT TCAAGGTGCC GCACGCGGAT GGATCGGAAG GGTTTTATCG CGTGGAGATA
GAAGCTCAGC GCACGACGGT CCCGTACCGC AGTCCATTCG AACACCGGAA GCCGCAGACG
CATCTCGAGT CGGCGATCGT CGTCGGCCCA AGCGGTGAAG AGGTCTATAC CGACGAGCTG
AATCGCATCA AGGTGCAGTT CATCTGGGAC CGCTTGAACA GCGGCGATGA ACAGGCTTCA
TGTTGGGTGC GCGCGGCACA AGCGGACACC GGGAGCGGCT ACGGCGGAGT TCACATGCCG
CGAGTCGGTG AAGAAGTGCT TATCGATTAC GTCGGCGGTG ATTGCGACAG ACCGGTTGTC
ATATCGCGGC TCTATAACGG CGCGACAAAG CCGCAATGGC ATTCCAATGG TTTGCTGTCT
GGCTACCGCT CGAAAGAGTA CGGCGGCACC GGTTACAACC AGATGGTAAT GGACGATGCC
ACGGGTCAGA ACCGCGTGCA ACTCTACAGT AGCAGCGCAA ATTCGCAATT GCACCTCGGT
TATCTTGTGC AGCAGACGGA TAACAGTCGC GGTGCGTTTC TCGGTAATGG CTTCGATCTG
AAATCGGATG CCTACGGCGC AATCCGTGCA GGTCAAGGTT TGTACGTGTC GACCTATTCC
GCCACGGTCA ACCAGCCGCT CGATGTGAGC CAGGCGAACA AACAACTGGT CAGCGCGGAA
AGCGTGGTCG AGATGCTGTC TGAGGCAAGT AGCGCGAATC AGGCAGAAAG TCTCGAGGAC
GGTCAGAACG CACTTAAGAA GTTCACTGAT GCTACCCAAT ACAGCACGTC CGGCAGCAGC
GGATCCGGTG GCCACACGGC GGGCGGTGGC ACAGGCAACG CTAACGGTTT CTCGACACCG
ATCATGCTGG TGGCGAGTCC CGCAGGTTTG GGCCTGTCGA CGCAGGACTC GACTCAGATC
ACCGCTAATC AGCATGTGAA CATCGTAAGT GGGCAAAGTA CTCACATCGC AACGGGCAAG
TCGTTGCTCG CAAGCGTATC CGAGAAAATC AGCCTCTTCG TGCAGAACGC CGGAATGAAG
TTGTTTGCGG CCAAGGGCAA AGTCGAAATC AAGGCGCTAA GCGATGAGAT GACGCTTGCC
GCGCTCAGGG ATTTTACGAT CACCAGCAGC GAAGGCAAGC TCGTGCTGTC GGCCGACAAG
GAAGTCTGGA TCGGCGCAGG CGGATCGTAT ATCAAGATCA CGCCCGACGG GATCGAGAAC
GGGACGACGG GCAAGATCCT CGAAAAATGC GCGGCATGGG ACAAACCCGG CCCCGCATCG
ATGCGAATTC CTTCGCCCCT CACTAGCGTC GTAAAGGGGT GTTCGTGGAA GACCGCGGCG
GCATCGGCGG ACAGTGCGTC CAGCGTCATT CTGGATTGA
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| Protein sequence | MSTQDGISAI TGGLIQQDRL LKLDTPLGTN ALVPQRAVGR SRIGRHFEFT VDVVSTSSTV
ELKTLIAQPV TLWIQQADKS YLPHNGYVHT ARRLGSDSGL TSYQLGFASW MHFLKFRRDQ
RIWQDKSVDE IVTDVFNAHP QAQGMFQFAL SQPLPSRSYC RQDEDDWNFA HRLLESEGLF
GLWQQAQDGK SHTLVITDRL ATAKGMSPEA VKFYRAGTGS ETDALTQWSG TRTLQSTTLT
TRTFDYKSPS TQFNPKGTNV PTMPNQGSLP DQAEVYEYTG AYTYPKQDRG DQLSKLRMEE
WESRAKRFHG EGGLRGIDAG LRFTLTGHPD HDRDAADQKE FAVIETAWVI ENNLPIGGPA
AGFPNSLQTT LLQVRETHAG VSTFKVPHAD GSEGFYRVEI EAQRTTVPYR SPFEHRKPQT
HLESAIVVGP SGEEVYTDEL NRIKVQFIWD RLNSGDEQAS CWVRAAQADT GSGYGGVHMP
RVGEEVLIDY VGGDCDRPVV ISRLYNGATK PQWHSNGLLS GYRSKEYGGT GYNQMVMDDA
TGQNRVQLYS SSANSQLHLG YLVQQTDNSR GAFLGNGFDL KSDAYGAIRA GQGLYVSTYS
ATVNQPLDVS QANKQLVSAE SVVEMLSEAS SANQAESLED GQNALKKFTD ATQYSTSGSS
GSGGHTAGGG TGNANGFSTP IMLVASPAGL GLSTQDSTQI TANQHVNIVS GQSTHIATGK
SLLASVSEKI SLFVQNAGMK LFAAKGKVEI KALSDEMTLA ALRDFTITSS EGKLVLSADK
EVWIGAGGSY IKITPDGIEN GTTGKILEKC AAWDKPGPAS MRIPSPLTSV VKGCSWKTAA
ASADSASSVI LD
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