| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5831 |
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| Symbol | |
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| ID | 6278834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2034038 |
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| End bp | 2036371 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642616895 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001889538 |
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| Protein GI | 187920506 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.36212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCCA CCGCAACGCA GCAACCGTTC GACGCCGGTT TGCGCGATCG CTTCCACCGG
CGCTCGCTCG AGCATCAGCG TCCGCTGTCC ACCGTGACCA TGGCGTTCAC CGTGGTCGCG
TTCCTGTGCT TCGTCGGGGC GCGCAATCTG GTCGACGGCC CGGCCGCGCC GCTCGGCTAC
CGGCTCACGT GCGCGCTGCT GCTCGCGTTG CTGGTGCTGG CGATTCCTCG CGTCAGGTCG
ACGTGGAGCT TCGGCCTGAT CGGCGTCGCT TACTCGCAGG TGCTGGTGGC GGGCCTCGCG
ATGAACATCG TGGGCGTCAC GCAACCGTTG CTGTGGACGC TGCCCGCGAT GGTCGTAATA
CCGATCTGCG CCGCGCCGCT CTGGCTCACG CCGACGCACT TCGTCACCGG CAGCGTGCTT
TTCTATGCGA CGGCGTTCGC GCTGCTGTTC GGCCAGCCGC TGACGCACGA CGTCGAGACG
GTGGTGTGGA TGTGGATCGT GGCGATCGGC GTGCCGACTT CCGTCGTGTT TCACTTCGGT
TTCTACCGGT TTCGCCGCAA CCACTTTCTG CTGGAGAGCC AGCTCGCGCA ACTTGCCGCG
ACCGACCCGC TGACCGGCCT GCAAAACCGC CGTGCGTTCG TCAAACAGGC CGAGCGCCGC
CTCGACACAG TCACGCCGGA TACGCGGACG AGCGCGATCT TTCTCGACAT CGACAACTTT
AAATCCCTGA ACGACCGCTT CGGCCATGCG ATCGGCGACC ACGCGCTCTA TCAGGTCGCC
CAGGTGCTGA TGGAAGAGAT CTCCGCGGAC GACAGCGTGA GCCGGATCGG CGGCGAAGAA
TTCGCGCTGC TGCTAGGCGA CGGTCTCACC GGCGCGCTTC ATGTGGCCGA GCGGCTGCGC
CATGCGATTG CCGCGATCGA GCGGCCGGAC GGCCGCCTGA CCGCGAGCTT CGGCGTGGCC
GAGCACCGCA GCGGCGAAAG CATCATGGTG CTGCTCGATC GCGCCGACGA AGCCTTGCTG
CGCGCCAAGC ATTCCGGCAG AAACCGGGTG CGCGCCGAGC GTGCGCTGCC GCGCGAGGCG
CTGCAACTGC TGGCCGACGA CGGATCCGAC GAGAACGGGG CGCCCGTGCG GCGGCACCGT
TGGGAGGAGT ACTACCTCAC CTCGTATTTC CAGCCGCTCT ACAGTTTGTC GCATCAGAAG
CAGGTGGGTT TCGAGGCCTT GCTGCGCGGC GAGCAGGACG ACGGCACTTT GGTGCCTCCC
GCGGTGCTGT TCGCGCCCAG GCCTTCGAGC GACGAAGGCG GGCTCGATCG CGCGAGTCAC
GTCGTGCATC TGGCCAACGC ACGCAAGTCG CTGCCGGACG ACGCGTGGCT CTTCCTCAAC
ATTCTGCCGG CCACGTTCAT TGCCGAAGGC TACGCGGACC AGTTGGCGAA AATCGTGCGG
TCCGTCGGAC TCGAACCCGA ACGCGTGATT CTGGAGATTC TCGAATCGCA CGGCGGCAGC
GTCGACGACA TGTCGCGGGC GGCGGCGCTC TATCGCGAGC ACGGCTTCCT GATCGCCGTC
GACGATTTCG GCGCCGGCCA GTCGAATCTC GACCGGCTGC TCAGGATTCG CCCGGATCTG
GTCAAGCTCG ACGGCGAACT GATTCGCGCG ACAGGTCACG GCACGGAGCA GCCGATTCTG
CCGAAGCTCG TTTCGCTGCT GCACCTGGCG GGGATGCTGG TGGTCGTCGA AGGCGTGGAA
ACCGCGGAAG AACTGATTCT CGCGGTGGAA TCGAATGTGG ATTTCGCACA GGGCTTTCTG
CTGGGGAGGC CGGCCAAAGA GATCGCGCCG CCGGAGTCGG TACACCGGCG CATCGACGAG
GCTTTCGATG TAATCGCGCA AGGGCGGGCG CATCAGCACG CATTGTTCGA AACCGAAGTA
GAGCCTTACC GGGTCGCCTT GCGGCTCGCT GCCGATGCGT TGCTGGCCGG TGTGGCCATG
GAAGAAGCGT TCGCCCGGCT CGCGAGGTTC GAGCGCTGCA TCAGCTGTTT CATTCTCGAC
GACGCGGGCA GGCAGATCGG TCAGGAGGTG CAGGGACCGG CCTGGACCAC TGACGGAGCT
TCGCTGCAAC CCGTGGCGAA TCCGCGCGAT GCGCGCTGGG ATCATCGGCC GTATTTCCGC
AACGCGGTGT TGCTGCCGGG CGTGGCGGTG TCGAGTAATC CTTATCTTTC GCTGGCGAGC
GGCAGGCCGT GTATCGCTGT GACGCTGGCG TTGCAATTTG CCGCCGAGCG ATCCGTGATC
GGCGTGGAAC TGGACTGGTC GGCGTTGGGC CTGCCCTGGC CCGCCGCGGA GTAG
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| Protein sequence | MLSTATQQPF DAGLRDRFHR RSLEHQRPLS TVTMAFTVVA FLCFVGARNL VDGPAAPLGY
RLTCALLLAL LVLAIPRVRS TWSFGLIGVA YSQVLVAGLA MNIVGVTQPL LWTLPAMVVI
PICAAPLWLT PTHFVTGSVL FYATAFALLF GQPLTHDVET VVWMWIVAIG VPTSVVFHFG
FYRFRRNHFL LESQLAQLAA TDPLTGLQNR RAFVKQAERR LDTVTPDTRT SAIFLDIDNF
KSLNDRFGHA IGDHALYQVA QVLMEEISAD DSVSRIGGEE FALLLGDGLT GALHVAERLR
HAIAAIERPD GRLTASFGVA EHRSGESIMV LLDRADEALL RAKHSGRNRV RAERALPREA
LQLLADDGSD ENGAPVRRHR WEEYYLTSYF QPLYSLSHQK QVGFEALLRG EQDDGTLVPP
AVLFAPRPSS DEGGLDRASH VVHLANARKS LPDDAWLFLN ILPATFIAEG YADQLAKIVR
SVGLEPERVI LEILESHGGS VDDMSRAAAL YREHGFLIAV DDFGAGQSNL DRLLRIRPDL
VKLDGELIRA TGHGTEQPIL PKLVSLLHLA GMLVVVEGVE TAEELILAVE SNVDFAQGFL
LGRPAKEIAP PESVHRRIDE AFDVIAQGRA HQHALFETEV EPYRVALRLA ADALLAGVAM
EEAFARLARF ERCISCFILD DAGRQIGQEV QGPAWTTDGA SLQPVANPRD ARWDHRPYFR
NAVLLPGVAV SSNPYLSLAS GRPCIAVTLA LQFAAERSVI GVELDWSALG LPWPAAE
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