| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0915 |
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| Symbol | |
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| ID | 6274252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | - |
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| Start bp | 1091430 |
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| End bp | 1093700 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642612969 |
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| Product | VacB and RNase II family 3'-5' exoribonuclease |
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| Protein accession | YP_001877528 |
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| Protein GI | 187735416 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATT CCCTTAAAGA CCGCCTGATC CGTCACATGG AAGACGGACA TTACGAACCT
CAGAGCAAAT CTGAACTGGC TCGCGCCCTG AACGTGGATT CCCGGCAGAA GCTGGATTTC
CGCGCCCTGG TGGACCAGAT GGAGGAGGAA GGAAAACTCG TGCGGCTGCA AAAGGGCAGG
TACGCTTTAA AACGGGAGCG CCGGAACCTG GTGCATGGCA TGATCCGCAT CCTGCGCTCC
GGCAAGATTC TTTTTCTCCC CAGAAAAGGG GATCCCGCCG CTGCGGCTCT GGGATGGGAC
ACGGAAGCCG TTCCGGAACT GGAACTTAAA CCCAACCATC TGGGCACCGC CCTGGACGGG
GACCGAGTGG CCGTGCGCGT GGAACGCAAG GCAGCCAGGG GACGGAGGAA TATCCGCAGA
AATCGCTTTT CTTCCCCGGA TGCCGACATG AAAGCCCGCG TGGAGGAAGT GACGGAACGC
GCGCGCTCCC GATGGCTTGG CGTCTTCCGC ACCGGAAAAA ACAAGCCGGG CCGCGTGCTG
GGGGACGGCG TAAGCTCTCC GTCATCCATT GAACTGGCGG AAAAACCCGC CATGGAGGTG
CTTCCCGGCC AACTGGTTTC CGTGGAGCCC ATAACCTGCG GTGAGGAAAA GAAAGCCCCG
CGCGGGAAAA TCGTGGAGGT GCTCGGCTAT CCGGACGAGC CTCACGTGGA CATGGAAGCC
GTTATCAGAA AATATGGCCT TTCCGTGGAA TTCCCCGCCT CCGTGCTCCG GGAGCTGGAA
ACGCTGCCTC AAACACCTTC CCCCGGGGAA CTCGCCCGCC GGGAAGACTG GACGGACCGT
ACCGTCATCA CCATTGACCC GGCAAGCGCC AGGGATTTTG ACGACGCCAT TTCCATCACG
GCCACTCCGT CCGGCTGGAC GCTGGCCGTT CACATTGCGG ACGTCTCCCA TTTCGTCAAG
CCCGGCGGCT CGCTGGATGG GGAAGCCCTG CGCCGCGGCA ACTCTACCTA CCTGCCGGAC
CGCGTTCTTC CGATGCTCCC GCACCGCCTT TCCGACGATT TGTGCAGCCT GCGGCCGGAT
GTCGTGCGCC TGACAAAAGT ATGCGAAATG AAATTTGATA AAAAGGGGAA GATGCTCCGT
GCCCGCTTTG CTGACGCTTT CATCCGCAGC AAGGCGCGCC TGACCTACCA GGAGGCCTTC
GCCATGCTGA AAGGAAACGA CAAAGGGGAA GTTCCCTCCA CGGTGCGGGA AGCCTGGAAT
CTGGCCTCCA TTCTGCGCCG CAACCGCTAC GCCAAGGGAG CCCTGGATCT GGACTTCCCG
GAAGTGAGAG CCGTTATGGA CAAGGACGGC CGCGTGACGG GCATCATCAC GGAAGAGTAC
GATGAAAGCC ATCAGCTCAT TGAAGAGTGC ATGCTGGCCG CCAACGAAGC CGTGGCCCTG
GCCCTGAAAA ACGGGAACCG TCCCACCATC TACCGTGTCC ACGAAGAACC GGATTCCGCC
AAACTTTTTG AATTCGGCCA GTTGTGCAGA CTGTACGGGC ATCCCGTGCA CGATATCGAC
CAACGCCAGT ACCTGAATGA ACTGATGAAA TCCATCAAGG GTTCCCCGGA CGAGCAATTG
CTTAAGCTGG CGCTCCTGAA AAGCTTGATG AGGGCCAGGT ACGACACGGA GCCCCTGGGC
CACTACGGCC TGGCCACCCC CAATTACTGC CACTTCACCA GCCCCATCCG CCGTTACGCG
GATCTGGTGG TACACCGCTC CCTGAATCCC CTGCTGGCCA ACCCTCCCAA AGGAGCTAAA
GGAGCAGGCA GTACAGGCAG GCTGGAGGAA GACGCGGAAC ACATTTCAGA AACGGAACGC
ATTTCCGCCA GCGCGGAAAA GGACGCGAAC CGGATGAAGC TCTTCGAATG GCTGGAAGGC
CAGTGCTACG CGGATCATCC GGAAGTGCAC GAAGCTCTGG TTACGGAAAC GCGCCACTTC
GGCGTTTTGC TGGAAATCCC GCGTCTCCAG ATTAAGGGGC TGGTCAAACC GGACAAGCTT
CCCGGCGGCC GCTGGGTGTA TGAGGCGTTT GCCAGCCGCT GGAAAAACGA CCACGGTTCC
GTGCTGTGCG CAGGGCTGCG CGTTCCCGTC ATTCCCGTGA AAGTGGACAG GGAGCAGCAG
TGGGCGGATT TCGCCATCGT CTCACGGGAG AAACCGCGGC AAACGGGAAA AACGGCCTTC
CCCACCAAAC AGGAGAAGGG CATATCCGGC CGCGGGCGGC GGAACCGCTG A
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| Protein sequence | MNNSLKDRLI RHMEDGHYEP QSKSELARAL NVDSRQKLDF RALVDQMEEE GKLVRLQKGR
YALKRERRNL VHGMIRILRS GKILFLPRKG DPAAAALGWD TEAVPELELK PNHLGTALDG
DRVAVRVERK AARGRRNIRR NRFSSPDADM KARVEEVTER ARSRWLGVFR TGKNKPGRVL
GDGVSSPSSI ELAEKPAMEV LPGQLVSVEP ITCGEEKKAP RGKIVEVLGY PDEPHVDMEA
VIRKYGLSVE FPASVLRELE TLPQTPSPGE LARREDWTDR TVITIDPASA RDFDDAISIT
ATPSGWTLAV HIADVSHFVK PGGSLDGEAL RRGNSTYLPD RVLPMLPHRL SDDLCSLRPD
VVRLTKVCEM KFDKKGKMLR ARFADAFIRS KARLTYQEAF AMLKGNDKGE VPSTVREAWN
LASILRRNRY AKGALDLDFP EVRAVMDKDG RVTGIITEEY DESHQLIEEC MLAANEAVAL
ALKNGNRPTI YRVHEEPDSA KLFEFGQLCR LYGHPVHDID QRQYLNELMK SIKGSPDEQL
LKLALLKSLM RARYDTEPLG HYGLATPNYC HFTSPIRRYA DLVVHRSLNP LLANPPKGAK
GAGSTGRLEE DAEHISETER ISASAEKDAN RMKLFEWLEG QCYADHPEVH EALVTETRHF
GVLLEIPRLQ IKGLVKPDKL PGGRWVYEAF ASRWKNDHGS VLCAGLRVPV IPVKVDREQQ
WADFAIVSRE KPRQTGKTAF PTKQEKGISG RGRRNR
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