| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0480 |
|---|
| Symbol | |
|---|
| ID | 6275422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 568821 |
|---|
| End bp | 571205 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642612530 |
|---|
| Product | Glycosyl hydrolase family 98 putative carbohydrate binding module |
|---|
| Protein accession | YP_001877099 |
|---|
| Protein GI | 187734987 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.133222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGCA ATCTCTCTTT TTCTCTGATG GAAGCTTCTG GACGATCCAT ATTTTTTCTG
ATAGAAGGAA TACGGGAACA GAGTATAAAA AATATGTTCA GCCGGATGTT TTCATGGAGT
TTTGTAGTTG CAGCGTGTTT GGCGGGATTA TTCCCGGCAC AGTCCCAGGG CGAGGAAAAA
GCTGCCCAAT CCGGAACCAT AGCCGTAAAA GTTCCTGCCT CCAGCCTGCT GATGACTCGC
CAGGAGACGG GGGAAACCCG GTTGGACCGG TCTTTCAGTA ATGCGGGGTT GAGCATAGGC
GGCAAAAAAT ATGCCACGGG AATCGGTACG CACGCTACGT CCATGATTCC CCTGCCCGTT
CCGGAAAACC CGAAAGTTTT GAGGCTGGAA GGTGCATGCG GAATTGATGA CGGTGCGGAT
GGAGACGGAA GCGTGGAATT CCGCGTGATG AGCGGGTCCG AGGTTTTATG GAGTTCCGGC
GTGATGAGGA GGGGGATGGC CGCGAAGAAG TTTTCCATTC CGGTGGCGGA AAACGGCATA
CGGCATCTTT ACCTGATGGC CGACCGGGTG GACAATAATT CTTACGACCA TGCGGACTGG
GTAGATCTGG CCTGGAAGAC GACAGGAAGT GGGCAGGGGA TGAAGGGAGC TGTGGTGAAT
GCCTCTGAAT TCGGCATGGT TCCCGGCGTC AGAAAAGATC AGGGGCCGGC GCTGCGGGCT
GCCGTTTCCG CTCTCCGGAG GCAGGGCGGG GGCGTTTTGA ACATCCCCAG AGGCATTTAC
CATTTTTATC CGGAGGGGGC TTTGAACATG AGTTTCCATA TTTCCAACCA TGACCAGCCG
CTGATTCATC CGGTGTGTGT GCCTCTGGCC GATTTGCGGA ATGTCCGCGT GGAGGGCAAT
GGTTCCCTGT TTCTTTTTCA CGGCAAGGTG GTTCCCCTCC TGGTGATGGA CAGCGAAAAT
GTCAGCATCA ACCGTTTATC CGTGGATTAC GAACGGTCCT GGTGCACGGA GGCGCGCGTC
GTGAAGACGG ATGACCGGTT CACGGAAGTG GAAATAGACA AAAAGGCCTA CCCTTACGAA
ATCCGGAACA ACAGGTTCGT TTTCCAGGGG AAAGGCTGGG AAGAAGGAAT GGGAAGCTGC
ATGGCCTTTG AGAAAGGGAC GGGACATATT ATCGCCAATA CATCGGACAT CGGCTGGAAC
GGGCATGTGG AGCCGCTGGG CGGGAGCCGT CTCCGTCTGT CCTGGAACCT CAGGCAGAAG
GGAATCAAGC CGGGGGATAC GCTGGTTCTT CGGAATTATA ACCGCCCCCA TCCGGGATGC
GTGGTGTACC GGGCTCGGAA AACATCACTG AATGACGTAT CTCTGCACCA GAGCTCAGGC
ATGGCCCTGC TGGTCCAGCG ATCGGAGGAC TTTCATATGA AAGGCGGCGG AGTCATGGTC
AGGAAAGGCA CAGGGCGCGT ACACACCGCC GGAGCGGACG CAACCCATTT TTCCAATACC
CGGGGCGGAA TCGTGGTGGA GAAAGCCCTG TTCGAAGGGA TGATGGATGA TGCCATCAAT
GTTCATTCCA CCTGCCTGGG CGTGATGGAA GTAGTGGACA GCCATACCCT GAAGTGCAAA
TACATGCATC GGCAGGCGGT GGGGTTTGAG GTGTTTCTTC CCGGTGAAAA AATCCGTTTC
ATCAACGGTC CTACGCTGGA ACCCGGCGGA ACGGCCACTG TGAAGACGGC AGTGAAAAAG
AATTCCGCGG AGATGGTGAT TACGGTGGAA GAGCCGCTCC CCTCCTCCGT CAGGGCCGGG
GATGCCGTGG AGAATGCGGA TTTTTACCCT TCCGTGGTTT TCCGCAACAA TATCGTCCGC
AACAACCGTG CCAGAGGATC TCTTTTTACA ACGCCGGAGA GAGTGCTGGT GGAGGGCAAT
TTGTTTGACC ATTCCTCCGG CTCCGCCATT CTATTGGCAG GGGATGCCCA GGGGTGGTAT
GAAAGCGGCG CCTGCCATGA AGTGGTGATC CGCAAAAATA CATTCATTAA CAACCTGACC
TCGCGTTACC AGTTTACGAA TGCCATCATT TCCATTTACC CGGAAGTCAA GCAGCTGGAC
AGGCAGAGGG ATTACTATCA TCGCAATGTG CTGATAGAAA ATAATGTTTT CAAGACGTTC
GATGTGCCGC TGCTGTTCGC CATTTCCACG GACAACCTCA AGTTCATCAA TAATAAGGTC
ATTTACAATG ACGAGTTTAA GGGATGGGGG CAGAAACCTT TCCAATTCAG AAGATGCGCC
AATATTCTGA TTAAAGATAA CAAGGTGCTG CCTCCCCGCA CATGGACCCT TGAGGACTGC
AAGCTGGAAA ATACCCCATC AGATCAGGTC CGCTTTGGTG GATAA
|
|---|
| Protein sequence | MEGNLSFSLM EASGRSIFFL IEGIREQSIK NMFSRMFSWS FVVAACLAGL FPAQSQGEEK
AAQSGTIAVK VPASSLLMTR QETGETRLDR SFSNAGLSIG GKKYATGIGT HATSMIPLPV
PENPKVLRLE GACGIDDGAD GDGSVEFRVM SGSEVLWSSG VMRRGMAAKK FSIPVAENGI
RHLYLMADRV DNNSYDHADW VDLAWKTTGS GQGMKGAVVN ASEFGMVPGV RKDQGPALRA
AVSALRRQGG GVLNIPRGIY HFYPEGALNM SFHISNHDQP LIHPVCVPLA DLRNVRVEGN
GSLFLFHGKV VPLLVMDSEN VSINRLSVDY ERSWCTEARV VKTDDRFTEV EIDKKAYPYE
IRNNRFVFQG KGWEEGMGSC MAFEKGTGHI IANTSDIGWN GHVEPLGGSR LRLSWNLRQK
GIKPGDTLVL RNYNRPHPGC VVYRARKTSL NDVSLHQSSG MALLVQRSED FHMKGGGVMV
RKGTGRVHTA GADATHFSNT RGGIVVEKAL FEGMMDDAIN VHSTCLGVME VVDSHTLKCK
YMHRQAVGFE VFLPGEKIRF INGPTLEPGG TATVKTAVKK NSAEMVITVE EPLPSSVRAG
DAVENADFYP SVVFRNNIVR NNRARGSLFT TPERVLVEGN LFDHSSGSAI LLAGDAQGWY
ESGACHEVVI RKNTFINNLT SRYQFTNAII SIYPEVKQLD RQRDYYHRNV LIENNVFKTF
DVPLLFAIST DNLKFINNKV IYNDEFKGWG QKPFQFRRCA NILIKDNKVL PPRTWTLEDC
KLENTPSDQV RFGG
|
|---|
| |