| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4772 |
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| Symbol | |
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| ID | 6246288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | + |
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| Start bp | 1841329 |
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| End bp | 1843284 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642596520 |
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| Product | DNA ligase D |
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| Protein accession | YP_001860927 |
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| Protein GI | 186473585 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGACGCT GGAATTCCAG CCGCGCGACA CGAATTCGTG CACCGGCCCC GGCAGCCGGC
GAAATGCCCG TCCTCATCGA GCCCCAGCTC GCGACACTCG TCGAGCGTCA TCCCGCGGCG
GGCCAGTGGT CGTATGAAAT CAAGTTCGAC GGCTACCGGA TGCTGGCGCG TGTCGACGCA
GGCCGAGTCA ACCTGTTGAC GCGCAACGGA CACGACTGGA CAGCCCGCGT GCCGCGTCTT
GCCGAAGCAT TGCAGGCGAT TCCTGCCGAT AGCGCGTGGA TCGATGGGGA AGCCGTCGTG
CTCGATTCAT CGGGCAAACC GGATTTCAAC GCGTTGCAAA ATGCTTTCGA TCGTCGTAGC
ACCGCGAATA TCGTTCTGTT CGTATTTGAC CTGCTGTGGA TCAACGGCGC GGACATTCGG
GAACAGCCGC TGCGGGCTCG CCGGGAATTG CTGCGGCGGC TGATGGAAGA AGTCGGCAAC
CCGCTGCTGC CGTTTTCCGA CGACTTCGCG CAAGACCCCG CGTCGCTCAT GGCGTCGGCG
TGCAAGATGA AGCTCGAAGG CATCATCGGC AAGCGCGTGG ATGCGCCGTA TCGGTCGGGC
CGCTCGACCG ACTGGATCAA GCTCAAATGC AACCTTCGAC AAGAGTTCGT GGTGGGAGGA
TTCACACGCG TGAAGGGCGC GAAGTCGGGG GTTCGTTCGT TGCTGCTCGG CGTGCATGAA
GATGACGGCT CCTTGCGCTA CGCGGGCCAC GTCGCGCCGC ATCTGCAGCC CGCGCGTGCA
GCAGCGTTCG CGAAGCGCGC CGCGTCGCTG GCGCAGTCAG AACCGTCTTT CTACAACGCA
CCGGAACGGG AGCGCGATCG CGAGTTTCAT TGGCTCAGAC CGGAGGTGGT CGCGGAAGTC
TCGTTTCTCG AATGGACGCC CGCGGGCGAA GTGCGCCATC CTGTTTTTCA TGCGCTGCGC
GAAGACAAAC CCGCGAGCGC CGTCACCGAA GAGAAGATCG TCGACGACCC CGACCTCGAG
CACGTGGGAT CGACCCGTGA GCGTCCAGGT CCGCGAGGAA CGGTCATCAT CGGCGACGTG
AGGATCAGCA ACCCGCAGCG CGTGATGGAC GAAGTGACGG GCCACACCAA GCTCGACATG
GTGCGGTACT ACGACGAGAT CGCCGAGTGG GCGTTGCCCC ATCTGCATTG CAGGCCGCTC
GCGCTAGTGC GCGCGCCCGA CGGCATCCAG AAGGAACTGT TCTTCCAGAA GCACAGCGAA
CGGGCCCGCA TTCCCGGCGT TCAGGAGCTG CCGCGCGAAC TTCATCCCGG ACATCCTCCG
CTGCTCGTTG CGAACAGTCG CGAGGCGCTG GTCGGACTCG CGCAGATGAG CGTCGTTGAA
CTGCACTCAT GGAACGGCGT GGCACCCGAC CTCGATCATC CGGACCGGGT GATCTTCGAC
CTCGATCCAG ACCCGTCGCT GCCGTGGACC GCGATGCTCG AAGCGGCCGC CCTCGTCAAA
GTCGTGCTCG ATGAAATCGG CCTCCGGTCG TTTGCGAAGA CCAGCGGCGG CAAAGGATTT
CACATTGTCG TGCCGCTGAC GCGTCGTCAG GGCTGGGCCG AAGTCAAAGC GTTTTCACAG
GCCGTCGCGC AACACATGGC GCGCGTTGTG CCGCAAAAGT TTTCGGCAGT GCTCGGACCG
AGAAATCGGG TTGGCAAGAT CTTCATCGAC TATCTGCGCA ACGGCAAGGG CGCCAGCACA
GTCGCGCCGT TCTCCATCCG CGCACGCTCG GGCATGGCAG TGTCGATGCC TGTTGCGTGG
GATGAACTCG CCGACGTGCG GCGCGGCGAC GAGTGGACGA TGTCGCAAGC CGTCAAACGG
CAACGCTCGT TGCGGGCCGA CCCGTGGGAA GGCTACTGGC GCACACGTCA GGGCATTACG
GCCGCCATGC GGCGCGCCGT GGGCATCAAG CGTTAG
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| Protein sequence | MGRWNSSRAT RIRAPAPAAG EMPVLIEPQL ATLVERHPAA GQWSYEIKFD GYRMLARVDA
GRVNLLTRNG HDWTARVPRL AEALQAIPAD SAWIDGEAVV LDSSGKPDFN ALQNAFDRRS
TANIVLFVFD LLWINGADIR EQPLRARREL LRRLMEEVGN PLLPFSDDFA QDPASLMASA
CKMKLEGIIG KRVDAPYRSG RSTDWIKLKC NLRQEFVVGG FTRVKGAKSG VRSLLLGVHE
DDGSLRYAGH VAPHLQPARA AAFAKRAASL AQSEPSFYNA PERERDREFH WLRPEVVAEV
SFLEWTPAGE VRHPVFHALR EDKPASAVTE EKIVDDPDLE HVGSTRERPG PRGTVIIGDV
RISNPQRVMD EVTGHTKLDM VRYYDEIAEW ALPHLHCRPL ALVRAPDGIQ KELFFQKHSE
RARIPGVQEL PRELHPGHPP LLVANSREAL VGLAQMSVVE LHSWNGVAPD LDHPDRVIFD
LDPDPSLPWT AMLEAAALVK VVLDEIGLRS FAKTSGGKGF HIVVPLTRRQ GWAEVKAFSQ
AVAQHMARVV PQKFSAVLGP RNRVGKIFID YLRNGKGAST VAPFSIRARS GMAVSMPVAW
DELADVRRGD EWTMSQAVKR QRSLRADPWE GYWRTRQGIT AAMRRAVGIK R
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