| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_2342 |
|---|
| Symbol | |
|---|
| ID | 6243828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 2627793 |
|---|
| End bp | 2629118 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642594133 |
|---|
| Product | xylose isomerase |
|---|
| Protein accession | YP_001858563 |
|---|
| Protein GI | 186477093 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2115] Xylose isomerase |
|---|
| TIGRFAM ID | [TIGR02630] xylose isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.158471 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTACT TCGAACACTT GCCCGCTGTG CGCTACGAAG GCCCGCAGAC GGACAACCCG
TTCGCTTATC GCCATTACGA CAAGGACAAG CTGGTGCTCG GCAAGCGCAT GGAAGACCAT
CTGCGCGTTG CCGTTTGCTA CTGGCACACG TTCGTTTGGC CTGGTGCGGA CATGTTCGGT
CCCGGCACGT TCGAGCGTCC GTGGCACCAC GCCGGCGACG CACTCGAAAT GGCGCACGCG
AAGGCCGACC ATGCGTTCGA GCTGTTCTCG AAACTGGGCA CGCCCTTCTA TACGTTCCAT
GATCTCGACG TCGCGCCCGA AGGCGACAGC ATCAAGAGCT ACGTGAACAA CTTCAAGGCA
ATGACGGACG TGCTCGCGCG CAAGCAGGAG CAGACGGGCA TCAAGCTGCT GTGGGGCACG
GCGAACCTGT TCTCGCATCC GCGCTATGCG GCGGGCGCAG CGACCAATCC GAATCCCGAC
GTATTCGCGT TTGCCGCGAC GCAGGTCCTC AACGCGCTCG AAGCGACACA ACGTCTGGGC
GGAGCGAACT ACGTGCTGTG GGGCGGACGC GAAGGCTACG AGACGTTGCT CAATACGGAT
CTCAAGCGCG AGCGCGAGCA GCTTGGCCGT TTCATGAGCA TGGTCGTCGA GCACAAGCAC
AAGACGGGCT TCAAGGGTGC GCTGCTGATC GAGCCGAAGC CGCAGGAACC GACCAAGCAT
CAGTACGACT ACGACGTCGC GACGGTGCAT GGCTTTCTCA CGCAGTTCGG TCTGCAGGAC
GAAATCCGCG TGAACATCGA GGCGAATCAT GCAACGCTCG CCGGTCATTC GTTTCACCAC
GAAATCGCCA ATGCGTTTGC GCTCGGCATC TTCGGCAGCG TCGATGCAAA TCGCGGCGAT
GCGCAAAACG GCTGGGACAC GGACCAGTTC CCAAATAGTG TCGAAGAACT GACGCTCGCG
TTCTACGAGA TTCTGCGCAA CGGCGGCTTC ACGACGGGCG GCATGAACTT CGATGCGAAG
GTCCGGCGCC AGAGCATCGA TCCCGAAGAC ATCGTGCATG GTCATATCGG TGCGATCGAC
GTGCTGGCGG TTGCATTGGA ACGCGCCGCG CATCTGATCG AGCACGACCG TCTGGCTGCG
TTCAAGCAGC AGCGCTATGC GGGTTGGGAC AGCGACTTCG GACGCAAGAT ACTGGCAGGC
GGCTATTCGC TCGAGTCGCT GGCAAGCGAC GCCGTGCAGC GAAACATCGC GCCTCGTCAT
GTGAGCGGAC AGCAGGAGCG TCTGGAGAAC ATCGTCAATC AGGCGATCTT CTCATCCGCG
AAATAG
|
|---|
| Protein sequence | MSYFEHLPAV RYEGPQTDNP FAYRHYDKDK LVLGKRMEDH LRVAVCYWHT FVWPGADMFG
PGTFERPWHH AGDALEMAHA KADHAFELFS KLGTPFYTFH DLDVAPEGDS IKSYVNNFKA
MTDVLARKQE QTGIKLLWGT ANLFSHPRYA AGAATNPNPD VFAFAATQVL NALEATQRLG
GANYVLWGGR EGYETLLNTD LKREREQLGR FMSMVVEHKH KTGFKGALLI EPKPQEPTKH
QYDYDVATVH GFLTQFGLQD EIRVNIEANH ATLAGHSFHH EIANAFALGI FGSVDANRGD
AQNGWDTDQF PNSVEELTLA FYEILRNGGF TTGGMNFDAK VRRQSIDPED IVHGHIGAID
VLAVALERAA HLIEHDRLAA FKQQRYAGWD SDFGRKILAG GYSLESLASD AVQRNIAPRH
VSGQQERLEN IVNQAIFSSA K
|
|---|
| |