| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3572 |
|---|
| Symbol | |
|---|
| ID | 6201485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 4051610 |
|---|
| End bp | 4052464 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641707528 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001834618 |
|---|
| Protein GI | 182680472 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.162128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTT TGCCACAAGA CAATCCGGGC CCGAAGGTCT GCGTGATCGG TTATCCGATC
AAACATTCAA GATCGCCCCT GATCCATAAT TATTGGCTGC AACGCTATGG CATTGCCGGC
TCTTATGAAA AAATTGAGGT AGCACCGGAG CATCTGGCCG ATTTTCTGCG GGACCTGGGC
GGCAAGGGTT TCGTTGGCGC TAATGTGACC TTGCCGCATA AGGAAACAGC CTTCGCGCTT
TGCGATGAGG TGAGCGAGGA AGCGCGGCAA TTAGGTGCTG TCAATACGCT GTTTCTGCGC
GATGGCCGAT TGCATGGCCA TAATACCGAT GGCGAAGGTT TTCTCGGCGC CCTCGATCAG
GAAGTCCCGG CTTGGGACAA GGATTTGGGA AAAGCCGTCA TTATCGGTGC TGGTGGTGCT
GCGCGGGCCC TGGTCTTCGC ACTGTTGCGG CGCGGTGCGG GGGAAATCGC CCTCGTCAAT
CGCACGCTGG CACGCAGCGA AGAGATTGCA ATGCAAGGTG GTGGACGCAT TACCTGCCAT
TCCTATGCGG ATCTGCCTGA TGTCTTGAAA ACGGCCGATC TTCTTGTCAA TGCGACGTCG
CTCGGGATGG CGGGACAGGA GCCGCTTGTC ATCGACCTTT CGCCTTTGCC GGCCAAGGCG
ATCGTGGATG ATATCGTCTA TGTGCCGCTA GAAACCGATC TCTTGCGGCA AGCGCGTTTG
CGCGGCCTGC GCCGTGTTGG CGGTCTTGGC ATGCTGCTGC ATCAGGCAGT GCCGGGCTTC
CGTCTCTGGT TTGGCAAAAC GCCTGAGGTG ACGCCGGAAT TGCGGGCTTT GATCGAGGCG
GATATCGGCG GTTAA
|
|---|
| Protein sequence | MNLLPQDNPG PKVCVIGYPI KHSRSPLIHN YWLQRYGIAG SYEKIEVAPE HLADFLRDLG
GKGFVGANVT LPHKETAFAL CDEVSEEARQ LGAVNTLFLR DGRLHGHNTD GEGFLGALDQ
EVPAWDKDLG KAVIIGAGGA ARALVFALLR RGAGEIALVN RTLARSEEIA MQGGGRITCH
SYADLPDVLK TADLLVNATS LGMAGQEPLV IDLSPLPAKA IVDDIVYVPL ETDLLRQARL
RGLRRVGGLG MLLHQAVPGF RLWFGKTPEV TPELRALIEA DIGG
|
|---|
| |