| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2817 |
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| Symbol | |
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| ID | 6207916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 3597144 |
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| End bp | 3597869 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641692480 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001819698 |
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| Protein GI | 182414632 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.604126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00223059 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGATCCAGC CGCGGAAGGA ACTCGATGGC GTCCTGCTCG TTGACAAGCC GACGGCACAC
ACCTCGCACG ACGTCGTGGC GCGACTGCGG CGCAAGCTGA ACATGAAGCG GATCGGCCAC
GCCGGCACGC TCGACCCCAT GGCCACGGGG CTGATGATCC TGCTCATCGG CAAGGCGACC
ACGATTTCCC AGTACCTCAC CAGCCTCGAC AAGGAATACG AAGGCACGAT CGAGCTCGGC
AAGGTGACGG ACTCGCAGGA CGCGGACGGC GAGGTATTGT CAACGCTGCC GGTGCCGCCG
TTCACCGAGG CGGAGATTCG CGCCGCGATG GCGGGTTTTA TGGGCGACCA GTATCAGACG
CCGCCGATGT ATTCGGCGAT CAAGGTCGAC GGCGTGCCGC TCTACAAGAC GGCGCGCAAA
GGCGGCGAGG TGGAGCGCGA ACCGCGGTTC ATTCGCGTGA GCAGCTTCGA ACTGACGCGC
TTCGCGCTGC CGCAGTTTGA TTTTCGGCTG CGCTGCACCA AGGGCACCTA CGTGCGCACG
ATCGCCCATG ACCTCGGCCA GCGGCTCGGT TGCGGGGCCC ACCTCGCGGC GTTGCGTCGT
ACGGCCACCG ACAAGTTCAA GCTGGCGGAC GCGCTGACGC TGGACGCGAT CGAGGCGTTG
CCGTTGCCCG AAATCGAAAA GCGGCTGATC CCCGTTTACC AGGCGGCGCC GAGCATCGTC
GGTTGA
|
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| Protein sequence | MIQPRKELDG VLLVDKPTAH TSHDVVARLR RKLNMKRIGH AGTLDPMATG LMILLIGKAT
TISQYLTSLD KEYEGTIELG KVTDSQDADG EVLSTLPVPP FTEAEIRAAM AGFMGDQYQT
PPMYSAIKVD GVPLYKTARK GGEVEREPRF IRVSSFELTR FALPQFDFRL RCTKGTYVRT
IAHDLGQRLG CGAHLAALRR TATDKFKLAD ALTLDAIEAL PLPEIEKRLI PVYQAAPSIV
G
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