Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3931 |
Symbol | |
ID | 6181112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 932309 |
End bp | 933727 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641683702 |
Product | type II secretion system protein E |
Protein accession | YP_001810613 |
Protein GI | 172062962 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0856952 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.304546 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACGTTCG GTACCCGCAA ACGGTCGACG CCGGAGCCTG CGCCGGCAGT GTCCCCGGCC GTGCCGCGCG ACGACGCGCC CGCGCCCGCG CCGGCGCCGA TCGCGAGCCA CGCGCCGCCG CCGTTGCGCG GGGCCGCGGC GGCCGACACG CAGGAGGCGC TGATCCGCTC CGGCAAGTTC GATGCGATTC GCACCGCGGT GTTCTCGTCG ATGAACATGT CGGCGGCGTT GATGAAGACG CGCGACGAAG TGCGCACGGG CATCGAGCAG GTGGCCGCGC ACACCGTCGA GCGCGAGCGC CTGAAGATCA CGGCGGGCGA GCAGGTGCTG ATCGTCGACG CGATCCTGAA CGACATGTTC GGCGTCGGGC CGATCGAGCC GCTGCTCGCG GACGACACCG TGTCCGACAT TCTCGTGAAC GGCCCCGACC AGGTGTACGT CGAGCGCGCG GGGCGGCTCG AACTCACGTC GCTGAAGTTT CGCGACAACG CGCACGTGAC GAGCGTCGCG CAACGGATCG CGGCGGCAGT CGGCCGCCGT GTCGACGAGA GCAGCCCGAT GGTCGACGCG CGCCTTGCCG ACGGCAGCCG CGTGAACGTG GTGCTGCCGC CGATCGCGAT GCGCGGCGCG TCGATCTCGA TCCGCAAGTT CGCGAAGCGC GACATCACGC TTGCGCGGAT GGCGCATCAG GGCAACATCT CGCACGGGAT GCTGCAGGTG CTGAAGATCG CATGCGCATG CCGGCTGAAC ATTGTGATCT CAGGCGGCAC CGGCTCGGGC AAGACGACGC TGCTGAACGC GCTGTCGCAG CACATCGAGG AGCACGAGCG GATCGTGACG ATCGAGGATG CGGCCGAGCT GCAACTGCTG CAGCCGCATG TCGTGAGTCT CGAGACGCGG CCGGAGAATA CCGAAGGGCT CGGCGGAATC TCGCAGCGCG ACCTCGTGCG CAATGCGCTG CGGATGCGGC CCGATCGCAT CATCCTCGGC GAAATCCGCG GCGCGGAGGC ATTCGACGTG CTGCAGGCGA TGAATACGGG CCACGACGGC TCGATGACGA CGATCCACGC GAACACGCCG CGCGACGCGA TCAGCCGGCT CGAAAGCATG GTGATGATGG CGAACGCGAA CCTGCAGCTG CTGTCGATCC GGCGCCAGAT CGCGAGCGCC GTGCACCTGT TCGTGCAGAT CGAGCGAATG CGCGACGGCG TGCGCCGCGT GACCCGGATC ACCGAGATCG TCGGGATGGA AGGCGAGGTC GTGATCACGC AGGACCTGTT CACGTTCCGG CAGGAAAGCG ACACGACGCG CGATGTGGTG AAGGGGGTGT TCGAGGCGTC GTCGCTGCGC CCTGCGTTCG CCCCGCGTGC CGCGTACTAC GGCATGGAGG ACGCGCTCTC CGAGGTATTC CGGCAATGA
|
Protein sequence | MTFGTRKRST PEPAPAVSPA VPRDDAPAPA PAPIASHAPP PLRGAAAADT QEALIRSGKF DAIRTAVFSS MNMSAALMKT RDEVRTGIEQ VAAHTVERER LKITAGEQVL IVDAILNDMF GVGPIEPLLA DDTVSDILVN GPDQVYVERA GRLELTSLKF RDNAHVTSVA QRIAAAVGRR VDESSPMVDA RLADGSRVNV VLPPIAMRGA SISIRKFAKR DITLARMAHQ GNISHGMLQV LKIACACRLN IVISGGTGSG KTTLLNALSQ HIEEHERIVT IEDAAELQLL QPHVVSLETR PENTEGLGGI SQRDLVRNAL RMRPDRIILG EIRGAEAFDV LQAMNTGHDG SMTTIHANTP RDAISRLESM VMMANANLQL LSIRRQIASA VHLFVQIERM RDGVRRVTRI TEIVGMEGEV VITQDLFTFR QESDTTRDVV KGVFEASSLR PAFAPRAAYY GMEDALSEVF RQ
|
| |