| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2516 |
|---|
| Symbol | |
|---|
| ID | 6178628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2794394 |
|---|
| End bp | 2795308 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641682292 |
|---|
| Product | periplasmic solute binding protein |
|---|
| Protein accession | YP_001809210 |
|---|
| Protein GI | 172061558 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.322122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATTG CCCTGAAGCG CGCGCCACGA CGCGCCCTGC CGCTTGTTCG CCTGCTGGCC
GCCTCGGCTG CCGTGCTGTC GATCGCGGTG CCCGCCTTCG CGCAGGCCGC GACCGTCAAC
GTGGTCGCCG CCGAGAATTT CTATGGCGAC GTCGCCTCGC AGATCGGCGG CCGCCATGTC
GCGGTCACCA GCATCCTCAG CAATCCCGAC CAGGATCCGC ACCTGTTCGA AGCGAGCCCG
AAGACCGCGC GCGCGCTGCA GCATGCGCAG GTCGTGATCT ACAACGGCGC GAACTACGAT
CCGTGGATGA GCAAGCTGCT CGGCGCGTCG AAGCAGGCGA AGCGCGCGAC GATCGTCGTC
GCGGATCTCG TCGGCAAGAA GGCCGGCGAC AATCCGCACG TCTGGTACGA CCCGGCGACC
ATGCCGGCCG CCGCGCGCGC GATCGCGGCC GAGCTTGGCC GTGCCGATCC GGCGAACAAG
GCCGACTACG ACGCGAACCT GCAGAAGTTC GTCGCGTCGC TGAAACCCGT CGACGACAAG
GTCGCCGCGC TGCGCGCGCA GTACAAGGGC GTGCCGGTGA CGGCCACGGA GCCTGTGTTC
GGCTACATGT CCGACGCGAT CGGCCTCGAC ATGCGCAACC AGCGCTTCCA GCTCGCGACG
ATGAACGACA CCGAAGCCAG CGCGCAGGAC GTCGCCGCGT TCGAGAACGA CCTGCGCAAG
AAGCAGGTGC GCGTGCTGAT CTACAACAGC CAGGCCGAAG CGCCGATGAC CAAGCGCCTG
CTGAAGGTCG CGCGCGACGG CGGCGTGCCG AGCGTGAGCG TCACCGAGAC GCAGCCGGCC
GGCAAGACCT TCCAGCAATG GATGACCGGC CAGCTCGACG CGCTCGCGGC CGCGCTTTCC
GCCAGCAAGA AATGA
|
|---|
| Protein sequence | MSIALKRAPR RALPLVRLLA ASAAVLSIAV PAFAQAATVN VVAAENFYGD VASQIGGRHV
AVTSILSNPD QDPHLFEASP KTARALQHAQ VVIYNGANYD PWMSKLLGAS KQAKRATIVV
ADLVGKKAGD NPHVWYDPAT MPAAARAIAA ELGRADPANK ADYDANLQKF VASLKPVDDK
VAALRAQYKG VPVTATEPVF GYMSDAIGLD MRNQRFQLAT MNDTEASAQD VAAFENDLRK
KQVRVLIYNS QAEAPMTKRL LKVARDGGVP SVSVTETQPA GKTFQQWMTG QLDALAAALS
ASKK
|
|---|
| |