Gene Pnec_1128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1128 
Symbol 
ID6183624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp983635 
End bp984267 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content43% 
IMG OID641671731 
ProductOmpW family protein 
Protein accessionYP_001797908 
Protein GI171463795 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.913908 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value0.155825 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATTA AGTCACTCGT AGCAGCCATG GCTGCAGTAG CATCTTTAGC TCCAATCGCG 
GCTCAAGCAC AGGCAGAAGA GAATCCTTGG ATGGTTCGTG TCCGCGCTGT AGATTTGCTT 
TTCCAGAACG GTCAAAATAG TACTGTTGCA GGTCTCAACA TCAAAGCTAA AAATCAAGTA 
ATTCCTGAAT TTGATATCTC TTATTTCTTT ACTAAAAATA TTGCAGCTGA GTTGGTATTG 
ACTTGGCCAC AGCAAGTAAA CATCACCGCA GGTTCTGGAA ACACTAACGT AGGTAAAGTT 
AGCGCATTGC CACCATCATT ATTGGTTCAA TACCACTTTA CTGATTTAGG TGCCTTTAAG 
CCTTACGTTG GTGCTGGTGT TAACTACACC ATCTTCGGTA ATCGTCAAAA TTTCCTAGCT 
CTTGGAAATG CAGTTCAAGT TGATAACTCC AGCGTTGGCG TAGTTGGTCA GATTGGTGCC 
GATTACATGC TTGATAAAAA CTGGGGCTTA AACGTTGACG TTAAATACGC AACTATGAGC 
ACTAACGTAA CTGTGGTTCA AGGCGGTGCA AATTTGGGTA AGTTGACTTT GAATCCATGG 
ATGCCTGCGG TAGGTGTGAC TTACAAGTTC TAA
 
Protein sequence
MRIKSLVAAM AAVASLAPIA AQAQAEENPW MVRVRAVDLL FQNGQNSTVA GLNIKAKNQV 
IPEFDISYFF TKNIAAELVL TWPQQVNITA GSGNTNVGKV SALPPSLLVQ YHFTDLGAFK 
PYVGAGVNYT IFGNRQNFLA LGNAVQVDNS SVGVVGQIGA DYMLDKNWGL NVDVKYATMS 
TNVTVVQGGA NLGKLTLNPW MPAVGVTYKF