| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1091 |
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| Symbol | |
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| ID | 6183956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 950347 |
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| End bp | 951258 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671701 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001797878 |
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| Protein GI | 171463765 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0150332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 74 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTATAC GGATCGACGG CGTAGTGTTG CTGGATAAGC CTGCTGGAAT GAGTTCTCAG
GATGCGGTAA CTGCTGTTAA ACACGCTTTT AATGCAGACA AAGCAGGGCA TACTGGTACT
TTAGATCCGA TGGCGACTGG CTTATTGCCA ATCTGCTTGG GCGAAGCAAC TAAGTATTCT
CAAGACTTAT TGGAAGCCGA TAAGACGTAT ATCGCTCAAG TGAAATTTGG CGCACGCACT
GATACTGGAG ATGCAGAGGG CCAGATCATT GAAGAGTTGC CTTTGCCGAC ATTTGCAAAT
GATGCTGAAA TCAAAATTGC CTTAGATGCA TTGCTTCCAA AATTTGCTGG CCCGATTTCT
CAAGTGCCAC CAATGTATTC CGCATTGAAG CGTGATGGTA AGCCTTTATA TGAATATGCT
CGTGCTGGTG TTGAGTTAGA GCGTATACCA CGTGACATTG TGATTCACTC CATTCGTTGG
ACAAACATCA ATTGGCCAGA AGCCACCCTG GAAGTAAGTT GTAGCAAGGG TACTTATATT
CGCGTGTTGG CTGAGGATAT TGGTAACGCT TTGGGTTGTG GCGCTCATTT AGTTGGCTTG
CGCCGTACTG AAGTGGGTCA TCTCACTTTG GAGCAGTCTT TTAAGATCGA ATCTATTCAA
AATGGCCTGC AAAATAGTGC TGACTATATT TTGCCGGTTG ACGCGCTTTT GCAAACCTTG
CCGCACTTAA CGGTGGATGA GCAACAAGCT AAACGCCTAG AGATGGGGCA ACGTGTTCCA
CTGAATTTAC CTTCTATCGA GGCATTGGTA CGTATCTATC GCGCCACTGC TGCTCCCCAT
AACTTTATTG GTACTGCCGA TTGGCGTTCT GGGGTTTTAC ATCCTAAGCG CTTAATTTCA
AAGGCTCACT AA
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| Protein sequence | MSIRIDGVVL LDKPAGMSSQ DAVTAVKHAF NADKAGHTGT LDPMATGLLP ICLGEATKYS
QDLLEADKTY IAQVKFGART DTGDAEGQII EELPLPTFAN DAEIKIALDA LLPKFAGPIS
QVPPMYSALK RDGKPLYEYA RAGVELERIP RDIVIHSIRW TNINWPEATL EVSCSKGTYI
RVLAEDIGNA LGCGAHLVGL RRTEVGHLTL EQSFKIESIQ NGLQNSADYI LPVDALLQTL
PHLTVDEQQA KRLEMGQRVP LNLPSIEALV RIYRATAAPH NFIGTADWRS GVLHPKRLIS
KAH
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