| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1001 |
|---|
| Symbol | |
|---|
| ID | 6183072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 872243 |
|---|
| End bp | 872656 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641671617 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001797796 |
|---|
| Protein GI | 171463683 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCA CAGACAAATC CGTTGAATAC TTTGGTCTCA AGATCCCCTT TTTGGCTCAT
TTAGGAGTGG TTCCTGAATA TGCAAAAGAT GGCAAGTCGC GCATCAGTTT AGATATCAAG
CCAGAGTATG AAAATAGCTT TGGCATTGCT CATGGTGGTG TGATCATGAC GCTTCTTGAT
TTTGCCATGG GGGCAGCAGC TAGAAGTACT ATAGATGTCC CATTAGGGGC GATGACAATT
GATATGACCG TCAGCTTTTT GCGCCCTAGT ATTGGCAAGA TCGTAGTTGA GGGCACCATT
CTTAAGCCAG GTAAAACAAT CAACTACTGT GAGGCAATCG TTTTAAATGA GGCGGGTGAG
ATAACCGCTA AATCTAGCGG TACCTTTATG CTCAGAAAAT CAAGCGCACC TTAA
|
|---|
| Protein sequence | MTSTDKSVEY FGLKIPFLAH LGVVPEYAKD GKSRISLDIK PEYENSFGIA HGGVIMTLLD
FAMGAAARST IDVPLGAMTI DMTVSFLRPS IGKIVVEGTI LKPGKTINYC EAIVLNEAGE
ITAKSSGTFM LRKSSAP
|
|---|
| |