Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4320 |
Symbol | |
ID | 6161198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4833283 |
End bp | 4834665 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641667097 |
Product | beta-galactosidase |
Protein accession | YP_001793336 |
Protein GI | 171060987 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
TIGRFAM ID | [TIGR03356] beta-galactosidase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.952407 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATGC CACCCAACGC CGCCGCCAAC CCGATCGCGC CCCCTGCAGG CTCGGCCATG AACCGTCGGG ATTTCGTCTG GGGCGTGGCC ACCGCCAGCT ACCAGATCGA GGGCGCCATC GATGCCGACG GCCGTCTGCC GAGCATCTGG GACACCTTCT GTGCCACGCC CGGCAAGGTG CTCAGGGGCG AGACCGGCGC GCTCGCCTGC GACCACTATC ACCGCTGGGA ATCGGATGTC GACCTGATCG CCGACCTGGG TGTCGACGCC TACCGCCTCT CGATCGCCTG GCCACGCGTG ATGCACGCCG ATGGCCGGCC GAATCAGGCC GGGCTCGACT TCTACAAGCG CCTGCTCGAC CGCCTCGCCG AGCGTGGCGT CAAGTGCATG GCCACGCTGT ATCACTGGGA CTTGCCGCAG CACCTCGAAG ACCGCGGCGG CTGGCTCAAC CGCGACACGG CCTATCGTTT TGCCGACTAC GCCGACCTCG TCAGCCGTGA GTTGTCGGGC CGTGTGAACG CCTACGCCAC GCTCAACGAG CCGTGGTGCT CGGCTTTCCT CGGCTACGGC AACGGCCATC ACGCACCGGG CCTGGCCAAC GGCCGCTACG CCACGCAGGC GATGCATCAC CTGCTGCTGG CGCACGGCCT GGCGCTGGCG CCGCTCGCGG CCAACGACCC GCAGGCGCAG CGCGGCATCG TCGCCAACGT CGGCCGCGGC AGCACGCTGG GCGACAGCGC CGCCGACCAC GAGGCCGCAC GCTTGTTCGA GTTGCAGCAC AACGACTGGG TGCTGCAGCC GCTGCTCAAG GGCAGCTACC CGCAGGACCT GTTCAAGCTC TGGCCCGGCA CCGAGCCGCT GGTGCTCGAC GGCGACCTGG CCACCATCAG CGGGCCGCTC GATTTTCTCG GCATCAACTA CTACTTCCGC AGCACCGTGC AAAGCGACGG CGCACACGGT TACACCGAGG TCACGCGGCC CGACGTCGAG CGCACGCAGA TGGGCTGGGA GGTGTACCCG CAAGGCCTCG AAGACCTGCT GCGCGGCTTC CACACCAGCT ACCCGAACCT GCCGCCGATC TACATCACCG AAAACGGCAT GAGCAGCGAT GACCGCGTGG TGAATGGCCC CAACGGCCCG CGTGTGGACG ATGCGCAGCG CCAGAGCTTC CTGCAGCGCC ATTTCGCTGC CATCAGTCGC GCCATCGACG CCGGCGTGGA CGTGCGCGGC TACTACATCT GGTCGCTGAT GGACAACTTC GAGTGGGCCT TCGGCTACGA GCGCCGATTC GGCCTGGTGC ATGTCGATTA CGCCACCCAG CAGCGCACCC TGAAAGACAG CGCGCTGCTG TTCCAGCACT ACCTGGCGCA GCGCAAGGGC TGA
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Protein sequence | MNMPPNAAAN PIAPPAGSAM NRRDFVWGVA TASYQIEGAI DADGRLPSIW DTFCATPGKV LRGETGALAC DHYHRWESDV DLIADLGVDA YRLSIAWPRV MHADGRPNQA GLDFYKRLLD RLAERGVKCM ATLYHWDLPQ HLEDRGGWLN RDTAYRFADY ADLVSRELSG RVNAYATLNE PWCSAFLGYG NGHHAPGLAN GRYATQAMHH LLLAHGLALA PLAANDPQAQ RGIVANVGRG STLGDSAADH EAARLFELQH NDWVLQPLLK GSYPQDLFKL WPGTEPLVLD GDLATISGPL DFLGINYYFR STVQSDGAHG YTEVTRPDVE RTQMGWEVYP QGLEDLLRGF HTSYPNLPPI YITENGMSSD DRVVNGPNGP RVDDAQRQSF LQRHFAAISR AIDAGVDVRG YYIWSLMDNF EWAFGYERRF GLVHVDYATQ QRTLKDSALL FQHYLAQRKG
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