| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4135 |
|---|
| Symbol | |
|---|
| ID | 6163796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4642557 |
|---|
| End bp | 4643663 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641666913 |
|---|
| Product | NHL repeat-containing protein |
|---|
| Protein accession | YP_001793152 |
|---|
| Protein GI | 171060803 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCGAT CCTGGCTCAC CCTCGCCGTG GCCGCAACGC TGGCGCTGCT GCAGGCCGCC
TGCATGCAGA TGCCCGCGCC CAACACCGCC GCCGCGGCGC GGCCGCTGGT GTTCCCGCCG
CCGCCCGACG AGCCGCGTTT CATCTACGAG CGCACCATCC GCTCCAGCGG CGACGTCGTG
CCCGACGAGG AAGCCAGCCG CCTGCGCCGC ATGGTCACCG GCGAGCAGCT CGGCGGCGAG
GCGCTCGCCA AGCCCTACGC GGTGGCGGTC TGGCGCGGCC GCATCTTCGT GTCCGACACG
GTGTCGCGTT TCGTGCGCGT GTTCGACGTG CCGCAGGGCA GCCATGCCAG GATCGGCGAC
GAGGAGGGCG AGGGCCAGCT GATCAAGCCG ATCGGGCTCG ACGTCGACGC CGCCGGCAAC
CTGTACGTGG CCGACATCGG CGCCCGCGCG ATCCTGGTCT ACGGGCCGGA CGGGCGCTAC
CAGCGCCGCA TCGGCGGCGG CGCGCAGAGC TTCGTGCGGC TGGCCAGCGT CACGGTCGAC
CCGGCCGGCG CGCGCGTGTA TGCGGTCGAT CTGGGCGGCG TCAGCTCCGA CCAGCACCGC
GTGCGGGTGT TCGACGCCCG CAGCGGCGCG CACCTGTCGG ACATCGGCCA GCGCGGCACC
GGGCCCGGCC AGTTCAACCT GCCACGCGAC ATGGCGATCG GCCGTGACGG CCGGCTCTAC
GTGGTCGACG GCGGCAACTT CCGGGTGGTG GTGTTCGATG CCGAGGGCCG CTACCTGCGC
AGCTTCGGCA GCGTCGGCAA GCAGTACGGC CAGTTCGCGC GGCCGAAAGA GGTGGCGATC
GACCGCGACG GCAACGTCTA CGTGGTCGAC ACCGCGTTCG GCAACTTCCA GATCTTCAGC
CCCGACGGCG AGCTGCTGAT GTTCGTCGGC GAGCGCTCCG AGCGCGACAG CCCGGCGCGC
TACATGCTGC CCTCGGGCAT CGCGGTCGAC GAGGACGGCC GGGTCTACGT GGTCGACCAG
TGGTTCCGCA AGATCGACGT CTTCCGCCCC GCCGCGCTGC CCGCGGGCAG CGGTTTCCTG
GCCCGCACGC CGCCCGCGGC CCGTTGA
|
|---|
| Protein sequence | MHRSWLTLAV AATLALLQAA CMQMPAPNTA AAARPLVFPP PPDEPRFIYE RTIRSSGDVV
PDEEASRLRR MVTGEQLGGE ALAKPYAVAV WRGRIFVSDT VSRFVRVFDV PQGSHARIGD
EEGEGQLIKP IGLDVDAAGN LYVADIGARA ILVYGPDGRY QRRIGGGAQS FVRLASVTVD
PAGARVYAVD LGGVSSDQHR VRVFDARSGA HLSDIGQRGT GPGQFNLPRD MAIGRDGRLY
VVDGGNFRVV VFDAEGRYLR SFGSVGKQYG QFARPKEVAI DRDGNVYVVD TAFGNFQIFS
PDGELLMFVG ERSERDSPAR YMLPSGIAVD EDGRVYVVDQ WFRKIDVFRP AALPAGSGFL
ARTPPAAR
|
|---|
| |