Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4108 |
Symbol | pyrF |
ID | 6160659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4613254 |
End bp | 4614108 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666886 |
Product | orotidine 5'-phosphate decarboxylase |
Protein accession | YP_001793125 |
Protein GI | 171060776 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
TIGRFAM ID | [TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.000000980823 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAACTTCA TCGACCAACT CGCCCGCGCC GAGCGGCTGC ACGACTCGCT GCTGTGTGTC GGCCTCGACC CGGAGCCGGG CAAGTTCCCC GGCGCCTGGA AAGGCGACGC CGGCAAGATC TTTGACTTCT GCGCCGCCAT CGTCGATGCC ACCAAGGACC TGGTGATCGC GTTCAAGCCG CAGATCGCCT ACTTCGCGGC GCATCGCGCC GAAGACCAGC TTGAGCGCCT GATGGCCTAC ATCAAGCGCA CGGCGCCGGA TGTGCCGGTG ATCCTCGACG CCAAGCGCGG CGACATCGGC TCGACCGCCG AGCAGTACGC CCGCGAGGCC TTCGAGCGCT ACCAGGCCGA TGCGGTGACG CTGTCGCCGT TCATGGGCTT CGACTCGATC GAGCCCTATC TGCGTTACGC CGACAAGGGC GTGATCCTGC TGTGCCGCAC CTCGAATCCG GGTGGCAACG ACTGGCAGAT GCAACGTCTG GCCGACGTGC CGGGCCAGCC GCGGCTGTTC GAGCACCTGG CGCATCGGGC GCAGACCGAA TGGAACCGCA ACGGCCAGCT CGCGCTGGTG GTGGGCGCGA CCTACCCGGC CGAGATCGCC CGCGTGCGTG AACTGGCGCC GACGCTGCCG CTGCTGATCC CCGGCGTGGG CGCGCAGGGC GGTGACGCGC AGGCCACCGT GCAGGCCGGC CTGGTGTGCG ACGCCAGCGG CGCGAGCACC GGCCCGATCA TCGTCAACAG CTCGCGCGCG GTGCTCTACG CCAGCGCGGG CGACGACTTC GCGCAAGCCG CCCGCCGCGT GGCGCTGGCC ACGCGCGACG CGCTCAACGC AGCGTCTGCT GCAGCCAGGC GCTGA
|
Protein sequence | MNFIDQLARA ERLHDSLLCV GLDPEPGKFP GAWKGDAGKI FDFCAAIVDA TKDLVIAFKP QIAYFAAHRA EDQLERLMAY IKRTAPDVPV ILDAKRGDIG STAEQYAREA FERYQADAVT LSPFMGFDSI EPYLRYADKG VILLCRTSNP GGNDWQMQRL ADVPGQPRLF EHLAHRAQTE WNRNGQLALV VGATYPAEIA RVRELAPTLP LLIPGVGAQG GDAQATVQAG LVCDASGAST GPIIVNSSRA VLYASAGDDF AQAARRVALA TRDALNAASA AARR
|
| |