Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4086 |
Symbol | |
ID | 6160208 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4581857 |
End bp | 4583773 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641666864 |
Product | type VI secretion protein |
Protein accession | YP_001793103 |
Protein GI | 171060754 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000000236966 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCGCG GCCTCGATCC CGGCCTGCTG CGCCACTACA ACGAGGAGCT CGCCTACCTG CGCGAGATGG GGCTGGAGTT CTCGCGCCAG TTCCCGAAGA TCGCCGCCCG GCTCGGCATG GACGGGCTCG AGGTGGCCGA CCCCTACGTC GAACGCCTGC TCGAAGGTTT CGCCTTCATG AGCGCGCGGG TGCAGTTGAA GCTCGACGCC GAGTACCCGC GCTTCATCGG CCACCTGCTC GAAAGCGTCT ATCCGAACGC GCTGGCGCCG GTGCCGTCGA TGGCGGTGAT GCGGCTGCAG CCCGATCTGG CCGACCCGGC GCTGGCTCGC GGCGCGCCGG TGCCACGGGG CAGCGCGCTG CATGCCGATC AGCTGCGCAG CCAGAACACG CGCTGCGAGT TCCGCACCGC GCATGCGCTG CGGCTGTGGC CGATCGAGAT CGCATCGGTG CAGTACTTCA GCCACGCCGG CGAGCTGCCG GTGGCGCGCC TGCCCGAGCT GCGGCAGGCG GCCGGCGGCC TGCGCATCCG CCTGCGGGCG CACGGCGGGC TGCGCTTCGA CCAGCTGCCG ATCGACTCGC TGGTGTTCTA CCTGGCCGCG CCCGACGAGG TCGCGTACCG GCTGCACGCG CTGATTTTCG GTGCCGGGCT GGGCAGCTGG CTGGCTGCGC CGGCCGCCAA CGCCCCGGTC CCTGGCAGCG CCGCGCGCCC GGTCGACCCC GGCCCGGCCG GCGCCGGGTG GCGCGGCGCC GATTCGCTGC AGCCCCTCGG TCATTCGGAT GACGAGGCGC TGCTGCCCGT CACCGCGCGC GGCTTCTCCG GCCACCGGCT GGTGCAGGAG CTGGCCGCGC TGCCGCAGCG GTTCCTGTTC GTCGAGGTGG CCGAGCTGCG CGCGCGGCTG GCCCGGCTGG CGGTCACCGA GGTCGACCTG TTCCTGCCCT TCAGCCGCGG CGAACCGGGC CTGGAGGCGC TGGTCGACGC CAGCAGCCTG GCGCTCAACT GCACGCCGGC GATCAACCTG TTCGGCAAGC GCCTCGACCG CATCCAGACC AGCGTGTCGA ACTGGGAATA CCACGTCGTG CCCGACCGCA CACGCCCGCT CGACTACGAG CTGCACAGCC TGGCGAGCGT CGTCGGCCAC GGCACCGGCC GGGTCGCCGA GCAGGCCTTC GCGCCGCTCT ACACCGCCTG CCACGACGAG GGCCCGGAGC AGCTCGCCTA CTACAGCCTG CGCCGCGAGG TGCGCCTGCC GTCGACGCGC CAGCAGGAGC AGGGTGCGCG CTCGTCCTAC CTCGGCAGCG AGGTGTTCGT GTCGCTGGTC GACCCGCACA ACCTGCCGTA TGCCGAAGAT GTGCGCCAGC TCTCGCTCAC CGGTCTGGTC AGCAACCGCG ACCTGCCGAT GCTGCTGTCG GGCAGCGGCT GGACGCTCGA CCTGCCCGGC CCCGTGCGCG GCGCCACCTG CCTGCGCGGG CCGACCGCAC CGCACGCCCG CCTGCCACGC GGCGACATCG GCTGGCAGCT CATCAGCCAG CTCACGCTCA ATCACCTGAG CATCGCGGGC GAGGATCCGC AACGCGCCGC CGCATCGCTG CGCAGCCTGC TGATCCACCA CGGCTCGGCC GACGACGCCG GCTGGCGCAA GCAGGTCGAG GGCCTGCGCG CGGTCTCGGC GCAGCCGGTG ACGCGGCGCC TGCCGATGCC CGGGCCGCTG GCCTACGGGC TGGGCGTGGC GATCGACGTG ACGGTCGACG AGCTCGCCTT CCAGGGCGGC AGCGCCTTCC TGATGGGCTG CGTGCTGGAG CGTTTCCTGG CCCGCCAGGC GTCGATCAAC AGCTTCACGC AATTGCGGCT GATCGCGCCC GGGCGCGGCA CGCTGATGAC CTGGCCGCCG CGCGTGGGCA GCGCCGCGGT GATCTGA
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Protein sequence | MSRGLDPGLL RHYNEELAYL REMGLEFSRQ FPKIAARLGM DGLEVADPYV ERLLEGFAFM SARVQLKLDA EYPRFIGHLL ESVYPNALAP VPSMAVMRLQ PDLADPALAR GAPVPRGSAL HADQLRSQNT RCEFRTAHAL RLWPIEIASV QYFSHAGELP VARLPELRQA AGGLRIRLRA HGGLRFDQLP IDSLVFYLAA PDEVAYRLHA LIFGAGLGSW LAAPAANAPV PGSAARPVDP GPAGAGWRGA DSLQPLGHSD DEALLPVTAR GFSGHRLVQE LAALPQRFLF VEVAELRARL ARLAVTEVDL FLPFSRGEPG LEALVDASSL ALNCTPAINL FGKRLDRIQT SVSNWEYHVV PDRTRPLDYE LHSLASVVGH GTGRVAEQAF APLYTACHDE GPEQLAYYSL RREVRLPSTR QQEQGARSSY LGSEVFVSLV DPHNLPYAED VRQLSLTGLV SNRDLPMLLS GSGWTLDLPG PVRGATCLRG PTAPHARLPR GDIGWQLISQ LTLNHLSIAG EDPQRAAASL RSLLIHHGSA DDAGWRKQVE GLRAVSAQPV TRRLPMPGPL AYGLGVAIDV TVDELAFQGG SAFLMGCVLE RFLARQASIN SFTQLRLIAP GRGTLMTWPP RVGSAAVI
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