Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3944 |
Symbol | |
ID | 6163589 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4422139 |
End bp | 4422882 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666722 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_001792963 |
Protein GI | 171060614 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAC GCCTTTTCGT CGACACGCCC CTGCAGGCCG GGCTCGACCT GTCGCTGCCC GCCGGCGCAG CGCGCCACGT CCAGGTCCTG CGGATGCAGC CCGGCGAAGA ACTGATCGTC TTCAACGGTC AGGGCGGCGA GTGGCGGGTG CGCATCGCGC GCATGGGCCG CAGCGAGGTG CAGGTGCTGG TGGAGCAGTT CGTCGACGTC GATCGCGAAC TGGCGCTGCA CGTCACGCTG GTGGCCGGCA TGCCGGCCAA CGAACGCTTC GACTGGCTGA TCGAAAAGGC CACCGAACTC GGCGCCGCCG AGATCGTGCC GACGATGTGC GAACGCTCGG TCCTGCGCCT GAGCGGCGAG CGGGCGCAGA AGAAACGCGA GCACTGGCAA GGCATTGCCA TCTCGGCAGC CCAACAGTGC GGCCGCACCC GCGTGCCCCA CATCGCCGCG GTGCGCAGCC TGTCCGAGGA GCGGGCCGGC GAATCCGCCG ACACCCCGGT GACCCAGCTG CTGCTGAGCC TGGCCGACGC GCAGCCGCTC GGCCGCCGCC TGGCCGCGCG CGCCGACACC GGTGCGCCGC TGCGGATCTA CAGCGGCCCC GAAGGCGGAT TCACCGAAGC GGAAGAGCGG CTGCTGCGCC AAGGCGGCGC GCAGCCGACC AGCCTGGGGC CGCGCGTGCT GCGCTCCGAA ACCGCACCGC TGGCCGTTCT CAGCCACCTC GCGCTCGACA CGACGAAACG CTGA
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Protein sequence | MSARLFVDTP LQAGLDLSLP AGAARHVQVL RMQPGEELIV FNGQGGEWRV RIARMGRSEV QVLVEQFVDV DRELALHVTL VAGMPANERF DWLIEKATEL GAAEIVPTMC ERSVLRLSGE RAQKKREHWQ GIAISAAQQC GRTRVPHIAA VRSLSEERAG ESADTPVTQL LLSLADAQPL GRRLAARADT GAPLRIYSGP EGGFTEAEER LLRQGGAQPT SLGPRVLRSE TAPLAVLSHL ALDTTKR
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