| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1990 |
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| Symbol | |
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| ID | 6163287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2157636 |
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| End bp | 2159051 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664759 |
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| Product | hypothetical protein |
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| Protein accession | YP_001791022 |
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| Protein GI | 171058673 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.000000720766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCGAAAG CGCCCCTTCG GGCCCTGGGC CTCGGGCTGG CGGCCCTGCT GTTGCCGATT
GCCGCACAGG CGGCCGACGT GGACGGCAGC CAGTTGGGCG GGGCCTGGGC CGTGCCGTTC
GCCGGCCTGC TGCTGTCGAT CGCGCTGTGC CCGCTGGTGT CGCCGATCGT CTGGCACCAC
CATTACGGCA AGATCACCGC GGCCTGGGCG CTGGCGTTCC TGCTGCCGTT TGCCTTTTTC
TACGGGCCGG CGATGGCCGG GCAGGGTTTC GTGCACGCCC TGCTGGCCGA GTACATCCCG
TTCATCATCT TGCTGACCGC GCTCTACACG GTGGCCGGCG GCATCTACAT CCGCGGCAAC
TTCCATGGCA GCCCGGGCTT CAACGTGGTG CTGATGGTGA TCGGCGCGGT GCTGGCGAGC
TTCATGGGCA CCACCGGCGC GTCGATGCTG ATGGTGCGCC CGCTGATCCG TGCCAACGAC
AACCGCAAGC ACGCCGCCCA CGTGATCGTG TTCTTCATCT TCATCGTCAG CAACGCCGGC
GGCTCGCTGA CGCCGCTGGG CGACCCGCCG CTGTTCCTGG GTTTCCTCAA GGGCGTCGAT
TTCTTCTGGA CGCTCAGCCA CATCTTTCCC GAGACGCTGG CTCTCGTCGG CGCGCTGCTG
GCGATCTTCT TCGTCATCGA CACCTGGTAC TACCGGCGCG AAGGCGTGGT GCGCGCCGAC
CCCACGCCCG ACGATCACAG CTTCGGCATC GAAGGCCACA TCAACGGCCT GCTGCTGCTG
GGCGTGGTCG CCCTGGTGCT GATGAGCGGC ACCTGGAAAC CGGGCATCAG CTTCGACATC
GCCGGCACGC CGGTCGGTCT GGAGCAGGTG GTGCGCGATG TCGGGCTGAT CGTCATCACG
CTGCTGTCGC TGGAGTTCAC GCCTCACAAC GCGCGCCAGC AGAACCAGTT CAACTGGGCA
CCGATGCAGG AGGTGGCCAA GCTGTTCGCC GGCATCTTCC TGACCATCAT CCCGGTGCTG
GCGATGCTCA AGGCCGGCAC CGCCGGGGCG TTTGCGCCGA TCGTCAACCT CGTCACCGCG
CCCGACGGCC AGCCGATCCC GGCGATGTAC TTCTGGGCCT CGGGCCTGCT GTCGTCGTTC
CTGGACAACG CGCCGACCTA CCTGGTGTTC TTCAACCTGG CCGGCGGCGA CCCGCAGGTG
CTGATGACCA CGCTCGCACC GGTGCTGGCG GCGGTGTCCG CGGGCTCGGT CTTCATGGGC
GCCAACAGCT ACATCGGCAA CGCGCCCAAC CTGATGGTCA AGGCGATCGC CGAAGACCGC
GGCCTGAAGA TGCCCAGCTT CTTCGGCTAC ATGGCGTGGA GCACCCTGGT GCTGTTGCCG
CTGTTTGCCG TCATGACCTT GATCTGGTTC CGCTGA
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| Protein sequence | MSKAPLRALG LGLAALLLPI AAQAADVDGS QLGGAWAVPF AGLLLSIALC PLVSPIVWHH
HYGKITAAWA LAFLLPFAFF YGPAMAGQGF VHALLAEYIP FIILLTALYT VAGGIYIRGN
FHGSPGFNVV LMVIGAVLAS FMGTTGASML MVRPLIRAND NRKHAAHVIV FFIFIVSNAG
GSLTPLGDPP LFLGFLKGVD FFWTLSHIFP ETLALVGALL AIFFVIDTWY YRREGVVRAD
PTPDDHSFGI EGHINGLLLL GVVALVLMSG TWKPGISFDI AGTPVGLEQV VRDVGLIVIT
LLSLEFTPHN ARQQNQFNWA PMQEVAKLFA GIFLTIIPVL AMLKAGTAGA FAPIVNLVTA
PDGQPIPAMY FWASGLLSSF LDNAPTYLVF FNLAGGDPQV LMTTLAPVLA AVSAGSVFMG
ANSYIGNAPN LMVKAIAEDR GLKMPSFFGY MAWSTLVLLP LFAVMTLIWF R
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