Gene Lcho_1516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1516 
Symbol 
ID6163342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1602099 
End bp1602581 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content69% 
IMG OID641664271 
Producthypothetical protein 
Protein accessionYP_001790549 
Protein GI171058200 
COG category[S] Function unknown 
COG ID[COG5319] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0816575 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTGC TCAACTTGCA GTGTGAAGCC GGCCACGGCT TCGAAGGCTG GTTCGGATCC 
GAAGCCGATT TCGTCGACCA GCAGCAGCGC GACCTGATCG CCTGTCCGGT GTGTGGCGGC 
TCACAGGTGC AGCGCATGCC GTCGGCGCCA CGCCTGAACC TGTCCGGCGC GCGCGAACCG 
GCGCCGGCCA CTGCGAAGTC CTCGGCTGCT GCTGTCTCCC CGACCCCTGC CGGCGCCGCC 
CAGGTGCCGG CGCGCCAGCT GGCCGAGGCG GCTTATCTGC AAGCCGTGCG TCATCTGCTG 
CGCAACACCG AAGACGTCGG CCCGCGGTTT GCCGAAGAGG CCCGCCGCAT CCACTACGGC 
GAGGTCGAGC ACCGCCACAT CCGCGGCCAG ACCAGTTCCG ATGAGGTGCG CGAGCTGCAC 
GACGAGGGCA TCGAGGTCTT CAACCTGCCG ATCCCCGCCG GCCTGGACGG CCCGCTGCAG 
TGA
 
Protein sequence
MKVLNLQCEA GHGFEGWFGS EADFVDQQQR DLIACPVCGG SQVQRMPSAP RLNLSGAREP 
APATAKSSAA AVSPTPAGAA QVPARQLAEA AYLQAVRHLL RNTEDVGPRF AEEARRIHYG 
EVEHRHIRGQ TSSDEVRELH DEGIEVFNLP IPAGLDGPLQ