Gene Lcho_1158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1158 
Symbol 
ID6163081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1239661 
End bp1240569 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content62% 
IMG OID641663912 
ProductCRISPR-associated Csd2 family protein 
Protein accessionYP_001790192 
Protein GI171057843 
COG category[L] Replication, recombination and repair 
COG ID[COG3649] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02589] CRISPR-associated protein, Csd2 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACTGA ACCACCGCTA CGACTTCGTT CTGCTCTTCG ACGTGAAGGA CGGCAACCCC 
AATGGCGACC CGGACGCCGG CAACCTGCCG AGGCTCGACG CCGAGACCGG ACACGGTTTG 
ATGACCGATG TGGCGCTCAA GCGCAAGGTG CGTAACTACG TGGGCCTCGT CCACGGAGAA 
CAGCCACCGC ACGAGATCTA CATCAAGGAA AAAGCCATCC TGAACAAGAC GCACGAACGC 
GCTTATGTTG CCGTCGGCGC GGGTGACTCG CTCAAAGGCG AGGACAAGAA GCGCAAAGGT 
GGCGGCGACG TCGTGGACAA AGCGCGCGAA TGGATGTGCG CCAACTTCTT CGATGTGCGG 
ACCTTCGGTG CAGTCATGTC CACTGGCGTG AATTGTGGTC AGGTGCGCGG CCCGGTGCAG 
ATGACCTTTG CCCGCTCGAT CGAGCCCATC GTCGCGCTGG AACATTCCAT CACCCGCATG 
GCCGTCGCCA CCGAAGCCGA GGCCGAGAAA CAAGGTGGCG ACAACCGCAC CATGGGCCGC 
AAGCACACCG TGCCCTACGG CCTGTATCGT TCACATGGTT TCATCTCGTC CTTCCTCGCC 
AGACAGACCG GCTTCTCCGA CGGCGATCTG GAACTGGTGA TGACGGCACT GAAGGACATG 
TTCGAACACG ACCGCTCTGC CGCACGCGGG CAGATGGCCA CCCGTGGGCT GTACGTGTTC 
AAACACGACA GCGAGTTGGG CAATGCTTCC GCACACAGCC TGTTCGACCG ACTGACGGTG 
ACACCCAATG CCCCAGGCAC GCCAGCGCGG GACTTCGGCG CCTACAGGGT GCTATTCGAT 
GGTCAACCGA TTGCAGAAGG CGCCAGCATG CAAGCCGCGC CTGGCGTGAC CTTGATGCGT 
CGCTGCTGA
 
Protein sequence
MSLNHRYDFV LLFDVKDGNP NGDPDAGNLP RLDAETGHGL MTDVALKRKV RNYVGLVHGE 
QPPHEIYIKE KAILNKTHER AYVAVGAGDS LKGEDKKRKG GGDVVDKARE WMCANFFDVR 
TFGAVMSTGV NCGQVRGPVQ MTFARSIEPI VALEHSITRM AVATEAEAEK QGGDNRTMGR 
KHTVPYGLYR SHGFISSFLA RQTGFSDGDL ELVMTALKDM FEHDRSAARG QMATRGLYVF 
KHDSELGNAS AHSLFDRLTV TPNAPGTPAR DFGAYRVLFD GQPIAEGASM QAAPGVTLMR 
RC