Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1155 |
Symbol | |
ID | 6163078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1238398 |
End bp | 1239036 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663909 |
Product | CRISPR-associated Cas4 family protein |
Protein accession | YP_001790189 |
Protein GI | 171057840 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1468] RecB family exonuclease |
TIGRFAM ID | [TIGR00372] CRISPR-associated protein Cas4 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGAAG AACCCGACCC CCTCCCTCTC TCGGCCCTGC AGCATTGGGC CTACTGCCCA CGCCAATGCG GCCTGATCCA CCTCGAACAA GCCTTCGACG ACAACCTGCA CACGCTGCGT GGCCAGGCCG TGCACAAGCA GGTCGATCAA CCCGGCATGG AAATCCGCAA GGGCCTGCGG GTGGAGCGTG CGCTGCCGGT CTGGCACGAC ACCCTGGGCC TGATCGGCAA GACCGACGTG GTCGAGTTCG AACCCGACGG CAGCCCCTAT CCGGTCGAAT ACAAACACGG CTCGCGCCAC AAGGCCGCAG ACATCGCTGC GGCTGACGAT CTTCAATTGG CCGCCCAGGC GTTGTGCCTG GAGGCGATGA GCGGTCACCC GGTACCCGAG GGCGCGATCT TCTACGCCAG TTCCAAGCGC CGCCGGGTGG TGCCGATCAG CACCGAACTG CGCCAGCAGG TGGCCGACAC CGCGGCAGCC ATCCGCACCA TGTTGACCGG CGGCACGCTG CCGCCACCCA CCACCGACGA GCGGCGTTGC AAAGGCTGCT CGCTGCGCGA CCGCTGCCAG CCTGAAGCCT GGCGGCAGAT GCACACCGGC GTCGATGTGC GCGCCCGACT GTTCGACCCG GAGCTTTGA
|
Protein sequence | MTEEPDPLPL SALQHWAYCP RQCGLIHLEQ AFDDNLHTLR GQAVHKQVDQ PGMEIRKGLR VERALPVWHD TLGLIGKTDV VEFEPDGSPY PVEYKHGSRH KAADIAAADD LQLAAQALCL EAMSGHPVPE GAIFYASSKR RRVVPISTEL RQQVADTAAA IRTMLTGGTL PPPTTDERRC KGCSLRDRCQ PEAWRQMHTG VDVRARLFDP EL
|
| |