| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0864 |
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| Symbol | |
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| ID | 6161701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 929082 |
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| End bp | 930560 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663614 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001789901 |
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| Protein GI | 171057552 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAGC CCACGAAGAC ATCGGACGAC GAAGCCCCTG CAGAACGCAC CCGCGTCGAA
GCAAGCATGG CACCGGCTCC AGGCCCAGGA CATCCGAACC AGATCGAACC CCTGCCCGGC
GAAGCCGGCA TCCCCGACGT CGCCGCGCAG GCGCGGGCCC AGCGTTCACG CAAGGGCCAG
ATCGCGCTCG CGATGCTGGT GCTATCGATC GCGGTGGTGT CGGCGATGGC GTTGCAACGC
TCGTTCTCGA CCGGCAAGCT GGAGGAGCGC AAAGAGGCCA AGCCCAATCG CGACCGCCCC
GCTGCGACGG TGAGCGCGCC ACGCCAGCTC GACCTGACCG GTCTGCCACC AGGGCCCGGC
GCGGCGAGTG CCACGAGTTC AGCCGCCCCA TTGGCCTCCG GTCCGCGCAT CCCCGCCATC
ACGACCACCG CTGACGATCG AGCCGAGCCC ATCGGCGTGC GGCGCACGAC TCCGGCATCC
GGCAGCTCGC CCGCCACGAA ACTGCCGCCG CCGGAAGACG CGCCTGTGCT GCTGGCCTCC
AGTCGTCCCG GCGCCGTGGC GACCGCAGCG CCGGCGACGA CAACTCCCTC AGAACCCGAC
GGCAAGGCCG ACCCGCTCGC GGCCACACAG CGCAACCTGC AGGCCTACCA GTCGCAGCTT
CAGGGCCTGA TGGACACGCT GAGCCGGACA GCCATCGCGG CCACGTCGCG CAACGAGGAG
CCCGCCGCCA CGATGCCGCC GAACCGACCG GCCCCGATCA ACGCGCCGGG ATCGACCAGC
AGCAGCCCGG CGTCCGGTGG CTTGTTCGGC GGCCAGTTAC AGGGCTCGGC CACACCCCGC
GTCAGCGCCA CGATGCTGGG CGACCGCAGC CTAACGCTGC CCAAGGGCAC GGCCTTCACC
TGTGCCCTCA AGACCCGGGT CATCAGCGCG AACTCGGGTC TGGTCGGTTG CCAGGTCCAG
CGCAACGTCT ACAGCGACAA CGGCCGGGTG CTGCTGATCG AACGCGGCTC GCACCTGGAC
GGCGAGTACC GCATCGCGTC GGTCAAGCCG GGCACGGTGC GCATCCCCGT GCTGTGGACC
CGCATCCGCA CGCCGCTGGG CGTGACGGTG GACATCGAGT CGCCCGGCAC CGGCCCGCTG
GGCGAGTCCG GCATCGACGG CCACGTCGAC AACCGCTGGA GCGAACGCCT CGGTGCGGCG
ATGCTGCTGT CGCTGATCGA CGACTCGGTC AAGCTGGTGA TCCAGCAGCA GTCCGGCGAC
GGTGCGGGCA ACGGCGGCAA TGGCGGCAAT ACCGTCGTAC TGCCCTCGAC CACCGCGCAG
ACCAGCAAGC TGGCCGAGAA GGTGCTGGAG AGCACGATCA ACATCCCACC GCTGATCTAC
CAGAACCAGG GCGGCGTAGT CGGCATCTAC GTCGGGCGCG ACGTCGACTT CTCGTCGGTC
TACGAGCTGC GACCGGTCTC GGGCGACGCC GCGCGCTGA
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| Protein sequence | MTEPTKTSDD EAPAERTRVE ASMAPAPGPG HPNQIEPLPG EAGIPDVAAQ ARAQRSRKGQ
IALAMLVLSI AVVSAMALQR SFSTGKLEER KEAKPNRDRP AATVSAPRQL DLTGLPPGPG
AASATSSAAP LASGPRIPAI TTTADDRAEP IGVRRTTPAS GSSPATKLPP PEDAPVLLAS
SRPGAVATAA PATTTPSEPD GKADPLAATQ RNLQAYQSQL QGLMDTLSRT AIAATSRNEE
PAATMPPNRP APINAPGSTS SSPASGGLFG GQLQGSATPR VSATMLGDRS LTLPKGTAFT
CALKTRVISA NSGLVGCQVQ RNVYSDNGRV LLIERGSHLD GEYRIASVKP GTVRIPVLWT
RIRTPLGVTV DIESPGTGPL GESGIDGHVD NRWSERLGAA MLLSLIDDSV KLVIQQQSGD
GAGNGGNGGN TVVLPSTTAQ TSKLAEKVLE STINIPPLIY QNQGGVVGIY VGRDVDFSSV
YELRPVSGDA AR
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