| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0808 |
|---|
| Symbol | |
|---|
| ID | 6162150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 871247 |
|---|
| End bp | 873448 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641663558 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001789845 |
|---|
| Protein GI | 171057496 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 95 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATTT TCCAGAAGCG ACCGTTGGTG GTCGCGGTGC TGGGTGCTCT GGCGGCCCAG
GCGTCTTTTG TCGCGAATGC CCAGAATACC GATGCCTCGA CCCAGGATGC CGAAGTCGTG
GTGACCGCCA ACAAGGTCAC CCAATCTGCA CTGAAGGTTG GCGCATCCCT TTCGGCGGTG
AGTTCCGACG ACATCCGTGA AAAGGGCGTG ACCGACGCCA AGGCGCTGAC GGACCTGATG
CCCAACACGC AGATCAGCCA GGCCGGCAAC AGCAGCGTGG TGGTCAACAT CCGCGGCATC
GAGAACACCA ACACCACCGC CCTGGGCGAG CCGGCTGCGG CCTTTCACAT CGACGGCATC
TATCTGGGAA GAATGTCGGG CGCGGGTTCC GCGTTCTTCG ACATCGAACG CGTCGAGGTT
CTGCGCGGCC CACAGGGCAC GCTGTATGGC CGCAACGCCA ATGCCGGCGT CGTCAACGTC
ATCACCAAGG CCCCGACCAA CAAGCGCGAA GGTTTCGTCT CGGTCGACGT GGGTAATCTC
GGCCAGAAAC GTGTCGACGG TGCCTATAAC CTGCCGGTCA ATGATTCGCT GGCACTGCGC
GCGGCATTTT CGACCAACCG CCGGGATGGT TATTCTGAAA CGAAGACCGC CACCAACGGT
TTCACCCAAA ACCAGGACAG CGTCCACACC GATTCGTTCC GACTGCAGGG TTTGCTGAAA
ATCTCGCCGC AGACCAGTCT GAATGTCTCG TACGACCAGA GCACCAACAA GACCACCGGC
CCGAACTATT ACAACCTGAC CGCCGGCATT CCCGACAAGC TGGTTGATAC GGGCGTCCTG
ATCCAGGGCA AGTTCAACGA CAAGGCCAGC GGTTTCAAGA CCGAGCTGAA ATCCGACCTT
GGTTTTGCCA ACCTGACCTA CATCTACGGC CAGCGCAACA CCAAGAACAA GGAAGACTAC
GCAACCGGAC CGCTGATCCT GCTGACCAAG TTCACTTTCG AACAGAATTC GCACGAGATC
CGACTGTCCT CGAACGACAC CGCCTCACCC CTGCAGTGGG TGGCCGGCTA CTTCCAGTAC
AAGGAAACCG GCAAGGACGG CCAGCTCGAC GGCAACGCAC CGTTCTACCT CTTCGGCCCC
GCCCCCGGAC CGGCCCCGTT CGGTCCTGAC CAGTGCGGTG GTTTTGCTGC CTGTTATCCC
GGCCTGCAGT TCCAGGATTA CCTGATCCAG AACGATTCCA AGGCGTTGTT CGGCCAAGCG
ACCTACAGCC TGAACGATAC CTCCCGCGTG ATCGTCGGCG CCCGCCACAC GGCCGACGAA
AAATCCCGCA ACAGCCAGCA GGTGCTGTCG TTCAGCGGCG TCGACTACAA CACGGCGACG
CCGGGCAACG CGGCGACGCC CCTCTTTGGC GATGCCTCGT GGCGCAGCTC AACCTACAAG
CTGGGCTATG AACTCGACAT CTCGGCCACG AAGATGCTCT ACACCAGCAT CTCGACCGGT
TTCAAGTCGG GCGGCTTCAA CGACGGCGAT ACCCGCGCCG ATCCCAGCCT GATCTACGCG
CCGGAGAAGA TCACCGCCTA TGAAGCGGGT CTCAATGGCA AGTTCTTCGA CAACGCCCTG
CAACTCACGT CATCGGTCTT CCATTACGAC TACAGCGACA TGCAGAAGTC GGGCATCGTC
AACGGACAGA GCAAGACGAC CAACACCGGC AAGGCGACTG TGGACGGCGT CGAGGTCTCC
GCGCGCTACC GAGTGAGCAG CGCGGGCCGG ATCGACACCG CCCTGGGACT GCTCGAGGCG
AAGTACAAGA ACTACACCAC GCCGAACGGC ACCGACTATG CGGGCAAGAA GCTCGACAAG
ACGCCCACGG TCACGCTGAA CGTCGGATAC ACGCACAACT GGAACCTCGA ATCGGGCGCA
CGCCTGACCG GCTACCTGGG CACCAAGTAC TCGGCGTCCT ACGTGACGAC CGATACCGGT
GACGTTGCTG TCGCTCCGAC CCAGTTCACG CAGAAGGCGT ACACGAAGTC GAGCGCTTCG
CTGACCTGGG CCGCCGAGGA CGATTCCATG GACGTCCAGT TCTACGTGCG CAACATCGAG
AACAAGTCGC AGCTGATGGG CTCGGTGGCG TTCTTCGGTG CGAACTACGG CTACATGAGC
GAGCCGCGCA CGCTGGGCGC CCGCGCCACG TTCCGCTTCT GA
|
|---|
| Protein sequence | MMIFQKRPLV VAVLGALAAQ ASFVANAQNT DASTQDAEVV VTANKVTQSA LKVGASLSAV
SSDDIREKGV TDAKALTDLM PNTQISQAGN SSVVVNIRGI ENTNTTALGE PAAAFHIDGI
YLGRMSGAGS AFFDIERVEV LRGPQGTLYG RNANAGVVNV ITKAPTNKRE GFVSVDVGNL
GQKRVDGAYN LPVNDSLALR AAFSTNRRDG YSETKTATNG FTQNQDSVHT DSFRLQGLLK
ISPQTSLNVS YDQSTNKTTG PNYYNLTAGI PDKLVDTGVL IQGKFNDKAS GFKTELKSDL
GFANLTYIYG QRNTKNKEDY ATGPLILLTK FTFEQNSHEI RLSSNDTASP LQWVAGYFQY
KETGKDGQLD GNAPFYLFGP APGPAPFGPD QCGGFAACYP GLQFQDYLIQ NDSKALFGQA
TYSLNDTSRV IVGARHTADE KSRNSQQVLS FSGVDYNTAT PGNAATPLFG DASWRSSTYK
LGYELDISAT KMLYTSISTG FKSGGFNDGD TRADPSLIYA PEKITAYEAG LNGKFFDNAL
QLTSSVFHYD YSDMQKSGIV NGQSKTTNTG KATVDGVEVS ARYRVSSAGR IDTALGLLEA
KYKNYTTPNG TDYAGKKLDK TPTVTLNVGY THNWNLESGA RLTGYLGTKY SASYVTTDTG
DVAVAPTQFT QKAYTKSSAS LTWAAEDDSM DVQFYVRNIE NKSQLMGSVA FFGANYGYMS
EPRTLGARAT FRF
|
|---|
| |