Gene Lcho_0580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0580 
Symbol 
ID6159950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp628673 
End bp629755 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content72% 
IMG OID641663329 
Productpeptide chain release factor 1 
Protein accessionYP_001789620 
Protein GI171057271 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.20812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCCT TCCTGCGCCA GCAGCTCAGC CGCCAGGCCT TGCGTCTGGC CGAGATCGAC 
GCCGCGCTGG CCGACCCCAA GGTCTGCAGC CAGATCGGCA CGCTGCGCAG CCTGAACCGC 
GAACACGCGC GGGTCTCGGC GCTGGTGGAT CGCTGGCAGC GTTACGAGCA GCGCGAGCAG 
GATCTGGCGG GCGCGCAGGA ACTGCTCGAC GAGCCCGAGA TGGCCGAGCT GGCGCGCGCT 
GAGATCGGCG CCGCGCAGGC CGATCTCGAC CGCCTCGACA GCGAGCTGCT GACCGCGCTG 
ATGCCGCGTG ACGCCGACGA CGACCGCAAC GCCTTCGTCG AGATCCGCGC CGGCACCGGC 
GGCGAGGAGT CGGCGCTGTT CGCCGCCGAT CTGGCGCGCA TGTACCTGCG CCACGCCGAG 
CGGCGCGGCT GGAAGACCGA GCTGATGAGC GAGAGCGTGT CCGACCTCGG CGGCTACAAG 
GACGTGGTGC TGCACATCAT CGGCGACGCG GTGTTCGAGG CGCTGAAGTA CGAATCCGGC 
GGCCACCGCG TGCAACGCGT GCCGGCCACC GAGGCGCAGG GTCGCATCCA CACCAGCGCC 
TGCACGGTGG CCGTGCTGGC CGAGGCCGAC GAGGCCGAGG AGGTGTCGCT GAATCCGGCC 
GAGCTGCGCA TCGACACCTA CCGCGCCAGC GGCGCCGGCG GCCAGCACAT CAACAAGACC 
GACTCGGCGG TGCGCGTCAC CCACCTGCCG ACCGGGCTGG TGGCCGAGTG CCAGGACGAC 
CGCTCGCAGC ACCGCAACAA GGCGCGCGCG CTGGCCGTGC TGGCTGCGCG CCTGCGCGAT 
CGCGTGCGCC AGGAACAGGC CGCCAAGGAC GCCGCGGCAC GCAAGAGCCT GATCGGCAGC 
GGCGACCGCA GCGACCGCAT CCGCACCTAC AACTTCCCGC AAGGCCGCCT GACCGACCAC 
CGCATCAACC TGACGCTCTA CAAGCTCGGC GCGGTGCTGG AGGGCGATCT CGACGAGGTG 
ATCGGCGCGC TGCAGGCCGC GCACGCGGCC GAGCAGCTGG CCGAGCTGGA GACGCAGGCG 
TGA
 
Protein sequence
MTPFLRQQLS RQALRLAEID AALADPKVCS QIGTLRSLNR EHARVSALVD RWQRYEQREQ 
DLAGAQELLD EPEMAELARA EIGAAQADLD RLDSELLTAL MPRDADDDRN AFVEIRAGTG 
GEESALFAAD LARMYLRHAE RRGWKTELMS ESVSDLGGYK DVVLHIIGDA VFEALKYESG 
GHRVQRVPAT EAQGRIHTSA CTVAVLAEAD EAEEVSLNPA ELRIDTYRAS GAGGQHINKT 
DSAVRVTHLP TGLVAECQDD RSQHRNKARA LAVLAARLRD RVRQEQAAKD AAARKSLIGS 
GDRSDRIRTY NFPQGRLTDH RINLTLYKLG AVLEGDLDEV IGALQAAHAA EQLAELETQA