| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_6349 |
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| Symbol | |
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| ID | 6134920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium sp. 4-46 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010511 |
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| Strand | - |
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| Start bp | 6976630 |
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| End bp | 6977484 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 78% |
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| IMG OID | 641646443 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001773047 |
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| Protein GI | 170744392 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00743094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0909411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGCCA TCGCCTCCCC CGCCCCTGCC CCGCCGGCGC CGGACGCCCC GGCCCTCCCC
GCCGCGGGAT CGTCCTTCTA CGCGGCGATG CGCCTGCTCC CGGCGGCGCA GCGCGACGCG
ATGTACGCGG TCTACGCCTT CTGCCGGGCG GTCGACGACG TGGCCGACGA CGGCGGCCCG
CGCGAGCAGC GCGCGGCCGA GCTCGACCGC TGGCGGGCCG ACATCGACGC GCTCTATGCC
GGGCGCCCGG TGGCGCGCAC CGCCGCGCTC GCCGGGCCGG TGGGGCAGTT CGGCCTGCGC
CGCGAGGATT TCCAGGCCGT CATCGACGGC ATGGCGATGG ATGCCGAGGC CGACATCGTG
GCGCCGGACG AGGCCGTGCT CGACCTCTAC TGCGACCGGG TCGCGAGCGC GGTCGGGCGG
CTCTCGGTGC GGATCTTCGG CCTCGCCGAG GGGCCGGGCC GCGACCTCGC CCACCATCTC
GGCCGCGCCC TGCAGCTGAC CAACATCCTG CGCGACGTCG ACGAGGACGC GGAGCGCGGG
CGGCTCTACC TGCCGCGCGA GCGCCTCGCC GCCATCGGCC TTCCCCGGCC GACGCCGGAG
GCGGCCCTGC GCCACCCCCG GCTCGGGGAG GTCTGCGAGG CGCTCGCCGC CGAGGCCGAG
GCCCATTACC GGGCCTCCTG GCGCATCATC GCGGCCTCGC CGCGCCGGGC CACCAAGGCG
CCGCGGATCA TGGCGGCGGC CTACCACCTC ATCCTCGACG GGCTGAGGGC GCGCGGCTGG
GCGGCGCCCC GCCCCCGGGT GAAGCCCGGC AAGCTCGCGC TGGTCGGCGT CCTCCTGCGC
CACGGGATCC TGTGA
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| Protein sequence | MTAIASPAPA PPAPDAPALP AAGSSFYAAM RLLPAAQRDA MYAVYAFCRA VDDVADDGGP
REQRAAELDR WRADIDALYA GRPVARTAAL AGPVGQFGLR REDFQAVIDG MAMDAEADIV
APDEAVLDLY CDRVASAVGR LSVRIFGLAE GPGRDLAHHL GRALQLTNIL RDVDEDAERG
RLYLPRERLA AIGLPRPTPE AALRHPRLGE VCEALAAEAE AHYRASWRII AASPRRATKA
PRIMAAAYHL ILDGLRARGW AAPRPRVKPG KLALVGVLLR HGIL
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