| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | M446_4238 |
|---|
| Symbol | truA |
|---|
| ID | 6129982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium sp. 4-46 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010511 |
|---|
| Strand | - |
|---|
| Start bp | 4676203 |
|---|
| End bp | 4676955 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641644382 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_001771021 |
|---|
| Protein GI | 170742366 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00146243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCT ACAAGCTCGT GGTCGAGTAC GACGGCAGCG GCTTCGCCGG CTGGCAGCGC
CAAGCCGCCG ACCGGACGGT GCAGCAGGCC CTGGAGGAGG CGATCGCGCG CTTCGCCGGC
GCGCCGGTGC GGGTGCATTG CGCGGGCCGC ACCGATGCGG GCGTGCACGC CACCCACCAG
GTCGTCCACC TCGACCTCGA CCGCGATTGG CGCACCGACA CGGTGCGCGA CGCGTCCAAC
GCCCATCTGC GGCCGGAGCC GGTCGCGGTC GTGAGCGCGG AGCGGGTGCG CCCCGACTTC
GACGCCCGCC ACTCGGCGCT GAGGCGCCAC TACCGCTACC GGATCCTGAA CCGCCGCAGC
CCGCCGGCCC TCGGCCGGGC CTATCTCTGG CACGTGCCCT GGTCCCTGGA CGCGCACGCC
ATGCACGCGG CGGCGCAGAC CCTGCTCGGC CGGCACGATT TCTCCGCCTT CCGGGCCGCC
GAGTGCCAGG CGAACAGCCC GGTGCGCACC CTCGACCAGC TCGACGTGGC GCGGATCGGC
GACGAGATCC TGGTCGCCAC CTCGGCCCGC TCCTTCCTGC ATCACCAGGT GCGCGGGATG
GTCGGCACCC TGATGCTGGC CGGGTGCGGC CGGCTCGACG CCGCCGGGGT GCGGGCAGTG
CTCGACTCCC GGGATCGGAC CCGCTGCGGC CCGCTCGCCC CGGCCGCCGG CCTGACCCTG
ACCGGCGTCG ACTACCCGGA GCCCGGCCCG TAG
|
|---|
| Protein sequence | MPRYKLVVEY DGSGFAGWQR QAADRTVQQA LEEAIARFAG APVRVHCAGR TDAGVHATHQ
VVHLDLDRDW RTDTVRDASN AHLRPEPVAV VSAERVRPDF DARHSALRRH YRYRILNRRS
PPALGRAYLW HVPWSLDAHA MHAAAQTLLG RHDFSAFRAA ECQANSPVRT LDQLDVARIG
DEILVATSAR SFLHHQVRGM VGTLMLAGCG RLDAAGVRAV LDSRDRTRCG PLAPAAGLTL
TGVDYPEPGP
|
|---|
| |