| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3083 |
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| Symbol | |
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| ID | 6117398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3775688 |
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| End bp | 3778426 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641634625 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001761449 |
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| Protein GI | 170727423 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000522801 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000005339 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTATAAGA ATAGCTTTCT AACTAATTCA GTGCGCTTTG CACTAATTAG TGGTGCAGCA
GCAACGGCAG TAATTAGTGC TCCAGCAGCA TTTGCTGCAG AAGAAGAAGC AAAAGATGTA
GAGCGTATTT CTGTAACAGG TTCACGCATT AAACGTACTG ATATGGAAAA TGCAGTTCCT
TTAACATCTT TTACTGCTGC AGATATTATG GCTTCAGGTG CTCCAACGCT TGAGCAATTT
GTACAAGCTT TACCATTAGC TAACGGTGGC CAGTATGGTT CAAACGTTAA CAATGGCGGT
ACCGGTACCG TGACTATGAA CCTTCGTGGT TTAGGTGATA CCCGTACTCT AGTTCTTGTT
AATGGTCGCC GTTACAGTGG TGATATTTCA ACCGTCCCAA TGGCTGCTGT TAAGCGTGTT
GATATTTTGC GTGATGGCGC TTCTACTATT TATGGTTCAG ATGCTATTGC AGGTGTAGTT
AACTTTGTCA CTAATGATGA CTTTGAAGGG GCACAAGTTG ATGTTCGTTA CCAACAGTCA
AGCGAAGGTG ACGGTGAAAC TAAGAGTGTT AACTTTTTAA CTGGTACAAG CAGCGACAAA
GGTAACATCA TTTTCTCTGG AACCTATGAA ACTCGAGAAG CTATCTACGG TTCACAACGT
GACTTTTCAT CATGCCCACC ATCTGAGGTT GATAATGATG GTGATGGTAA TAACGATGGT
TTAGTTTGTG GTGGATCAGG TACAACAATG CCTGGCTCAG CATGGAGCCC TTCACATGGT
TTTGGTCAGT TAGATGGTAA TGGTGGCATT CGTCCACTTA CAGATGAAGA TAAATTTAAC
TATGCTGCGC TTAGTATTCT TTATCAACCA CTCGAAAAGC ACTCATTTTT CACACAAGGA
AACTATGAGC TAATTGATGA AGGTTTCTCT ACTGTAAACT TTTTCACTGA AGCTGCTTAT
ACAAACCGTA TTTCAAATCA ACAAATGGCA CCAGTTGGTA CATTCTGGGG TGTAGAAGTT
CCAACAACAA ACCCAGGTAA CGATCTAGGT GAAACGGCTT ATGCATATCG CCGTTTAGCT
GAAACAGGTG GACGTACGTG GGAGCGTGAA GTTAACGAGT TTAACTTAAC TATGGGCTTC
AACGGTGAGT TTGCAAATGA ATGGTACTGG GATGTGTCAT ACATGCGTTC TCAGCGTCGT
ACTGATACAA ATGCTGGTGG ACGAGTTCAT CAAGAGCGTG CAGGTATCTT AACTAGCCCT
GAATTATGTG CTGCAAATGA TGAGTGTCCT GGTGTATGGA ACCCATTTGC ATCAAATACT
TTGACTCAAG AGATGCAAGA TTGGATTATT GTTCCAATGA CAAGTAACTC TAAGGGTGAA
GATACTCAGC TACAAGTTAA CATTGCTGGT GACTTCGGTG ATCTTGAGCT ACCTGCAGGT
CCAATCTCAT GGGCTGCTGG TTATGAGCGC TTAACTACTA GTTATGTATC TATTCCTGAT
GGAGCAGCTG GATTAGGCGC TATCTATGGT GTAAGTGCTG AAGGAACTGA AGGTGCATAC
TCTACTGATG CATACTATGC AGAGCTTAAT TTCCCAATTT TAGCAGACTT ACCTTTCGCT
AAAAGTGTCA ACCTTACAGT GGCAGCGCGT AATACCGATG TTAGTGTCAT AAAAGATAAT
GAAGTGACAA CTAAGTTCGG CTTAGAGTGG CGTCCAGTTG ATGATATTCT TGTACGTGGT
AGTCTTTCTG AAGGTTTCAG AACACCAAGT ATCAGTACAT TATTCGCGCC TCGCGCAAAC
TCTGCTACAT CTTATAGTGA CCCATGTGAG AATTACGGTA CAAACGCAGG CGCAAGTGCT
ACTTTGAAAG CCAACTGTGC TGCTGATGGC CTAGCTCCAG ATTGGAGTCC AATTACTGAC
CAAGCTAGTG CATGGGTTGG TGGTAACCCA GATATTGGTC CAGAAAAATC AACTAGCTTA
AGTGTTGGTG TTGTATATTC TCCTGATTAC TTAGAAGGAT TCTCGGTAAC ATTAGATTAC
TATGACATCG AAATCACTGA TGTTATTGGT TCTCTTGGTA TGGGAACTAT TGCGACTGAG
TGTTATAACA GTGAGAACTT CTCTTCTCCA ATGTGTGACC AAATTAAAGG TCCTGCTGCA
TACGGTGAGC AAGGTGGAGA GCGTCGTAAC TCATTAGGTA ACTTGTCAGG TGTTGATTTA
TCTACACAAA ATCTAGGTTT CTTCAATGCT AGCGGTATAG ATTTTGACAT TAACTATGCC
TTTGATGTTG CAAACGGTAC TTTAGACTTC AACTTAGAAG GTACAAGAGC GCTTACACTT
GAGCATCTTG AAGCTGAAGG ACTTGAGAAA ACATCATTAG CTGGCTATTA CGGTAATGAT
GTTGCAAATG GCGGTAAAGG TTCATTCCCT GAGTGGAAAG CAGCATTTAG AACTAGCTTC
TCTGCAGATG ATTGGACTGT AACCTATAAC ATGCATTACC AAAGTTCTGT AGATGATTAT
GCTCCAATTG AAACAAATCT ATCTAACAGT GTTGGTACTA TGCTGTACCA TGATATTAAT
GCATCATACT ACTTCAGCAA CATAACATTG TCAGGTGGTA TCAATAACTT GACTGATGAG
CAACCACCAT ATGTAAGTAA TGGTACAAAT GGATACTTGA TTCAGTCTCA CCGTTTGACT
GGTCGCCAGT ACTATGTATC TGCTAGCGTG AAGTTTTAA
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| Protein sequence | MYKNSFLTNS VRFALISGAA ATAVISAPAA FAAEEEAKDV ERISVTGSRI KRTDMENAVP
LTSFTAADIM ASGAPTLEQF VQALPLANGG QYGSNVNNGG TGTVTMNLRG LGDTRTLVLV
NGRRYSGDIS TVPMAAVKRV DILRDGASTI YGSDAIAGVV NFVTNDDFEG AQVDVRYQQS
SEGDGETKSV NFLTGTSSDK GNIIFSGTYE TREAIYGSQR DFSSCPPSEV DNDGDGNNDG
LVCGGSGTTM PGSAWSPSHG FGQLDGNGGI RPLTDEDKFN YAALSILYQP LEKHSFFTQG
NYELIDEGFS TVNFFTEAAY TNRISNQQMA PVGTFWGVEV PTTNPGNDLG ETAYAYRRLA
ETGGRTWERE VNEFNLTMGF NGEFANEWYW DVSYMRSQRR TDTNAGGRVH QERAGILTSP
ELCAANDECP GVWNPFASNT LTQEMQDWII VPMTSNSKGE DTQLQVNIAG DFGDLELPAG
PISWAAGYER LTTSYVSIPD GAAGLGAIYG VSAEGTEGAY STDAYYAELN FPILADLPFA
KSVNLTVAAR NTDVSVIKDN EVTTKFGLEW RPVDDILVRG SLSEGFRTPS ISTLFAPRAN
SATSYSDPCE NYGTNAGASA TLKANCAADG LAPDWSPITD QASAWVGGNP DIGPEKSTSL
SVGVVYSPDY LEGFSVTLDY YDIEITDVIG SLGMGTIATE CYNSENFSSP MCDQIKGPAA
YGEQGGERRN SLGNLSGVDL STQNLGFFNA SGIDFDINYA FDVANGTLDF NLEGTRALTL
EHLEAEGLEK TSLAGYYGND VANGGKGSFP EWKAAFRTSF SADDWTVTYN MHYQSSVDDY
APIETNLSNS VGTMLYHDIN ASYYFSNITL SGGINNLTDE QPPYVSNGTN GYLIQSHRLT
GRQYYVSASV KF
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