| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4094 |
|---|
| Symbol | lpfC |
|---|
| ID | 6142994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4187436 |
|---|
| End bp | 4189958 |
|---|
| Gene Length | 2523 bp |
|---|
| Protein Length | 840 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641618918 |
|---|
| Product | long polar fimbrial operon protein LpfC |
|---|
| Protein accession | YP_001746056 |
|---|
| Protein GI | 170684256 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.118889 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGA CCAGAATAAA GGTTGGCCTC ACGGCAGGGA CGTGTCTGAT TTTCTCGCAA
AGCCTGATGG CCGAGGTCAG TGTATTCAAT CCGGCGCTTC TGGAAATCGA CCATCAATCC
GGAGTCGATA TTCGCCAGTT TAATCGGGCA AACCTGATGC CCCCAGGTGT TTATAGCGTT
GATATTTTTA TCAACGGTAA AATGTTTGAA CGTCAGGATG TGACCTTTGT TCAGGATAAT
CCCGATGCTG ATTTACACGC CTGCTTTGTC GCTATTAAAA AAACGCTAAC CACCTTTGGC
GTAAAAGTTG ATGCGCTGAA ATCGCTCAAT GATGTAGATG AAACAGTCTG TATTGATCCT
GGGCCACGCA TTGAAGGCTC ATCATGGCAG TTCGACAGCG ATAAACTGCA ACTGAATATC
TCCATTCCCC AAATCTATAT GGATGCGATG GCTTATGATT ACATCAGCCC CTCGCGTTGG
GATGAGGGGA TTAACGCGCT CACCATCAAC TACGATTTTT CTGGTTCACA TACTCTACGT
TCGGATTATG GTTCACAAGA GACAGATACC AGTTATCTCA ATCTGCGCAA TGGACTGAAT
ATTGGGCCGT GGCGATTACG CAATTACAGC ACCTTAAATA CGACCGATGG CAGTGCAGAA
TACAACTCTA TAAGCACCTG GATACAACGT GATATAGCTG CGTTAAGAAG CCAGATTATG
ATAGGTGATA CGTGGACGGC GAGCGATATC TTCGACAGTA CGCAAATTCG TGGCGCACGC
TTGTATACCG ATAACGATAT GTTGCCTGCC AGCCAAAACG GATTTGCCCC CGTAGTGCGT
GGGATTGCAA AGTCTAACGC CACTGTCATT ATTCGCCAGA ATGGCTACGT GATTTATCAG
TCAGCCGTTC CACAAGGTGC TTTTGAAATT ACCGACCTCA ACACCGCCAG TACAGGTGGT
GATCTGGACG TAACCATCAA AGAAGAAGAC GGTAGCGAAC AACGATTTAC TCAACCTTAT
GCGTCGTTAG CCATCCTCAA ACGTGAAGGT CAAACTGATG TTGATGTCAG TGTGGGAGAA
TTACGCGATG AAGATGGCTT TACCCCTGAC GTTATTCAGG CTCAGATCCT TCATGGTTTT
CCCTACGGTT TCACCTTGTA TGGAGGTATG CAGGCTGCTG AAAAGTATGG TTCTGCCGCT
TTGGGTGTCG GTAAAGATCT TGGCGCATTG GGCGCAATTT CTTTCGATGT GACACATGCT
CGCGCGAAAT TTAGCCATGA TGATACGGAA ACCGGTCAGT CTTATCGCTT CCTGTACTCG
AAACGCTTTG ACGATACGGA TACCAGCTTG CGCCTGGTTG GCTATCGTTA CTCCACCGAA
GGTTATTATA CCCTCAATGA ATGGGCGTCC CGGCGTAATA ATCCTGAAGA TTTCTGGGAA
ACCGGTAACC GCCGCAGCCG TGTGGAAGGA ACGTTAACGC AATCACTGGG CAGAGATTAT
GGCAACTTAT ATCTGACATT AAGTCGCCAG CAGTACTGGC ATACCGATGA TGTTGAACGA
TTAATGCAAT TTGGCTACAG CAGTAGCTGG AAGCGTCTCT CGTGGAACGT CTCCTGGAGT
TATTCCAATA CTGCCCGGCA GGGGACGGGG AACAACCATG CCAGTGATAA CACCAGTGAG
CAGATCTACA TGCTCTCTTT ATCTGTTCCT TTATCGGGCT GGTGGGGGAA TAGTTACGCC
ACCTATTCTG TTTCACAAAA CGATAATTCC GGTAGCTCAC ATCAACTTGG ACTCAGCGGT
ACGGCGCTGG AAAGAAATAA CCTTTCCTGG AATTTAATGC AGTCCTATAA CAGCCATGAT
GATGAGGTTG GCGGTAATAT GTCCCTGACC TATGATGGCA CTTATGGCAC GGTGAACGGC
AGCTATAACT ACAGCCAAAA TTCTCAGAGG CTGAATTATG GTATCAGAGG GGGAATTCTG
GCTCACAGCG AAGGCGTAAC GTTAAGCCAG GAGTTGGGTG AAACCATAGC TCTTGTTAAA
GCACCAGGGG CTGCCGGGTT AGAAATAGAC AATATGCGTG GTGCTGCGAC GGACTGGCGT
GGTTATACGG TCAAGACACA GCTAAACCCT TATGATGAAA ACCGGGTAGC AATCAGCGAT
AACTATTTCT CGAAGTCGAA TATAGAACTT GATAATACCG TCGTTACGAT GGTTCCCACC
CGTGGCGCGG TGGTTAAAGC CGAATTTGTT ACTCGTGTAG GTTATCGTGT GCTTTTCAGG
GTGGCGGGTA CAAAAGGTAA ACCCGCACCT TTTGGCGCTA TTGCTACAGT ACAAAATACA
AGCTCCGCTG ATTCAGGGAT TGTCGGTGAC CTGGGGGAGC TTTATCTCTC TGGCCTTCCT
GAAAAGGGGC AAGTAATGCT CTCCTGGGGG GAAAATGCCG CCACTACATG CACCTTCGAT
TATTCAATTT CAATACCAGA AAGTGAAAGC GGCTTAATTG AACAAGGTGT GACATGTCAT
TAA
|
|---|
| Protein sequence | MMTTRIKVGL TAGTCLIFSQ SLMAEVSVFN PALLEIDHQS GVDIRQFNRA NLMPPGVYSV
DIFINGKMFE RQDVTFVQDN PDADLHACFV AIKKTLTTFG VKVDALKSLN DVDETVCIDP
GPRIEGSSWQ FDSDKLQLNI SIPQIYMDAM AYDYISPSRW DEGINALTIN YDFSGSHTLR
SDYGSQETDT SYLNLRNGLN IGPWRLRNYS TLNTTDGSAE YNSISTWIQR DIAALRSQIM
IGDTWTASDI FDSTQIRGAR LYTDNDMLPA SQNGFAPVVR GIAKSNATVI IRQNGYVIYQ
SAVPQGAFEI TDLNTASTGG DLDVTIKEED GSEQRFTQPY ASLAILKREG QTDVDVSVGE
LRDEDGFTPD VIQAQILHGF PYGFTLYGGM QAAEKYGSAA LGVGKDLGAL GAISFDVTHA
RAKFSHDDTE TGQSYRFLYS KRFDDTDTSL RLVGYRYSTE GYYTLNEWAS RRNNPEDFWE
TGNRRSRVEG TLTQSLGRDY GNLYLTLSRQ QYWHTDDVER LMQFGYSSSW KRLSWNVSWS
YSNTARQGTG NNHASDNTSE QIYMLSLSVP LSGWWGNSYA TYSVSQNDNS GSSHQLGLSG
TALERNNLSW NLMQSYNSHD DEVGGNMSLT YDGTYGTVNG SYNYSQNSQR LNYGIRGGIL
AHSEGVTLSQ ELGETIALVK APGAAGLEID NMRGAATDWR GYTVKTQLNP YDENRVAISD
NYFSKSNIEL DNTVVTMVPT RGAVVKAEFV TRVGYRVLFR VAGTKGKPAP FGAIATVQNT
SSADSGIVGD LGELYLSGLP EKGQVMLSWG ENAATTCTFD YSISIPESES GLIEQGVTCH
|
|---|
| |