| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4073 |
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| Symbol | trmE |
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| ID | 6144536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4163496 |
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| End bp | 4164860 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641618898 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001746036 |
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| Protein GI | 170681108 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.420944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGATA ATGACACTAT CGTAGCCCAG GCCACGCCTC CGGGACGTGG CGGCGTTGGC
ATCCTGCGCA TCTCCGGCCT CAAAGCCCGT GAGGTTGCCG AAACCGTGCT GGGTAAACTG
CCAAAGCCGC GCTACGCCGA TTATCTTCCG TTTAAAGACG CCGACGGCAG CGTGCTCGAT
CAGGGGATTG CGCTATGGTT CCCTGGCCCG AACTCGTTCA CCGGCGAAGA TGTGCTGGAA
CTGCAAGGTC ATGGCGGTCC GGTGATCCTC GACCTGCTGT TAAAACGCAT TCTGACCATT
CCCGGCCTGC GGATTGCCCG CCCTGGTGAG TTTTCCGAAC GCGCATTTCT GAACGATAAA
CTCGACTTAG CCCAGGCCGA AGCGATTGCT GATCTTATCG ACGCCAGCTC GGAACAGGCG
GCCCGTTCGG CGCTAAACTC GCTGCAAGGC GCATTCTCCG CACGGGTCAA CCATCTGGTG
GAAGCCCTCA CCCACTTGCG CATTTACGTC GAAGCGGCAA TTGATTTCCC GGATGAAGAG
ATCGATTTCC TCTCCGACGG CAAAATTGAA GCCCAGCTCA ATGACGTTAT TGCCGATCTT
GATGCAGTGC GTGCTGAAGC ACGTCAGGGT AGTTTGTTGC GCGAAGGGAT GAAAGTGGTG
ATTGCCGGAC GTCCTAACGC CGGTAAATCG AGCCTGTTAA ACGCGCTGGC GGGCCGTGAA
GCGGCAATCG TAACCGATAT CGCCGGAACC ACGCGTGACG TGCTGCGTGA GCATATCCAC
ATTGACGGAA TGCCGCTGCA TATCATCGAT ACCGCCGGGC TACGTGAAGC CAGTGACGAA
GTGGAACGTA TTGGTATCGA GCGCGCGTGG CAGGAAATTG AACAGGCCGA CCGCGTGCTG
TTTATGGTCG ATGGCACCAC GACAGACGCC GTTGATCCGG CAGAGATCTG GCCGGAATTT
ATCGCCCGTC TGCCAGCGAA ACTGCCGATC ACCGTGGTGC GCAATAAAGC CGATATCACC
GGCGAAACGT TGGGGATGAG CGAAGTGAAC GGTCATGCGT TAATTCGTCT TTCGGCGCGG
ACTGGCGAAG GCGTGGATGT GCTGCGTAAC CATCTCAAAC AGAGCATGGG CTTTGACACC
AATATGGAAG GCGGCTTCCT GGCGCGTCGT CGTCACCTAC AGGCGCTGGA ACAGGCGGCA
GAGCATTTGC AGCAAGGTAA AGCGCAACTG TTGGGTGCCT GGGCGGGTGA ACTGCTGGCG
GAAGAGTTGC GCCTGGCGCA GCAGAACTTA AGCGAAATCA CCGGGGAGTT TACTTCAGAC
GACCTGCTTG GGCGGATTTT CTCCAGCTTC TGTATTGGTA AGTAA
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| Protein sequence | MSDNDTIVAQ ATPPGRGGVG ILRISGLKAR EVAETVLGKL PKPRYADYLP FKDADGSVLD
QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTI PGLRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE AQLNDVIADL DAVRAEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL
FMVDGTTTDA VDPAEIWPEF IARLPAKLPI TVVRNKADIT GETLGMSEVN GHALIRLSAR
TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALEQAA EHLQQGKAQL LGAWAGELLA
EELRLAQQNL SEITGEFTSD DLLGRIFSSF CIGK
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