Gene YPK_1004 details

Gene Information

• Locus tag: YPK_1004
• ID: 6090079
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 1130266
• End bp: 1132188
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 641596067
• Product: general secretion pathway protein D
• Protein accession: YP_001719758
• Protein GI: 170023253
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATATTA GTGGCAAAGG AATTAAATCT ATCCATGGGA TGATTTTTTT ATTCACTCTA 
ATTATGCCAT TAGACATAAT AAGTGCTAAT TTTTCAGTCT CTTTCAAAGA TGTGGATATA 
AAAGAGTTTA TTAATTCAGT AAGTAAGAAT ATTAATAAAA CTATTATCAT AGATCCTACG 
GTCCAAGGGC TTATCAGCAT TCGCAGTTAT GAGACTTTGG ATAAAGATAC GTATTATCAA 
CTATTCTTGA ATGTGCTTGA TGTCTATGGT TATGCGGCCA TTGAGATGCC ACATAATGTC 
CTCAAAGTGA TTTCATCAAA AAGAGCCAAA GGAGTAGTCG CACCGCTCCC AAAAGAGGGG 
GTAACATTCG ATGGTGATGA ATTGATAAAT AGAGTTATTC CTCTTAGGTA CATATCAGCA 
AAGAAAATAA CGCCATTATT GAGGCAACTC AATGATAATA CGGAGTCTGG CAGTATTATT 
AATTATGACC CATCTAATAT TTTGTTAATT ACAGGGCGTG CTGCGGTAGT AAACCGTCTG 
CATTCAATAG TTACTGATCT TGACCAAGCC GGAGATAATG AAATTGAGCT TTATAAACTC 
AATTATGCGA TTGCTGCTGA TGTTGTTAAA ATAGTAAATG AAGCTATAAA TCCAATAAAT 
AATTTAAAAC AAGAAGTATC AATAGTAGGA AAGGTTATTG CTGATGAAAG AACAAACTCT 
ATATTAATCA GCGGTGATAC ATATATCAGA AAAAAATCCA TTCTAATGAT AAAAAAACTC 
GACAAGCGAC AAAGTAGCGA TGGGAATACA AAAGTGGTTT ATATGAAATA TGCTCAAGCC 
TCAAAGCTAT TAGATGTCTT AAATGGAATA AGCGAAGGTT TTCATAATGA GAAAAAAACA 
AAACAATCTA ATCAATGGAA TCAGAGACCT GTAGCAATAA AGGCATATGA TCAGACGAAT 
GCATTAGTTA TTACGGCAGA TCCTGACATG ATGCTAGCCT TAGGAGAAGT AATAGAAAAA 
TTAGATATCA GACGTGCACA GGTTTTGGTT GAGGCTATTA TTGTCGAAAC TCAAAACGGA 
GAAGGTATTA ACCTTGGTGT TAAATGGGAA AATAAGCGTT CTGATGATAT TAATTTTATT 
AAAAATTCCG ATGGTTTATT AAATAATAAT GGATGGGGCA TAGCTACGAC AATTACTGGA 
TTAACTGCTG GTTTTTATAA AGGAAACTGG GATGTATTGC TTAGCGCTTT ATCAACAAAT 
AAAAATAATA ATATACTCGC AACTCCCAGT ATTGTTACTC TCGATAATAT GGAGGCTGAA 
TTCAATGTGG GTCAGGAGGT TCCAGTGCTC ATATCAACGC AAACGACAAC CACAGATAAG 
GTATATAATT CAATTTCAAG GCAATCTATA GGTGTCATGC TAAAAGTAAA GCCACAAATA 
AATAAAGGTG ATTCGGTTCT ACTTGAAATC AGGCAAGAGG TGTCGAGTAT CGCTGATAGT 
TCTACTGTTA ATACACATAA TTTAGGGTCT GTTTTTAATA AACGAGTAGT GAATAATGCA 
GTATTAGTTA AAAGTGGAGA AACAGTTGTT GTTGGTGGAT TACTTGATAA GAAGTCTAGT 
ACGATTGTTA ATAAAGTCCC CTTCTTGGGT GATCTCCCAT TAATAGGATG GCTATTTAGA 
CAAACCAAAG AGAAAGTGGA AAAAAGTAAT CTTATTCTAT TTATAAAACC GACGATACTT 
AGGGAGTCCG ATGACTATAG CGTTGTGACG TCAAAAGAAT ATAATAAATA TAAAAAAGAT 
AATATGAATG GATATACTTT AGCCGATGAT ATAGTCCTAT CAGATAAAAA ATATTTAAGT 
GTTATTCCTA GTATTAGGAA AGATATAAAT AATTTTTATA CACTGTTGGA CTCAGAGCTA 
TGA 

 

Protein sequence

MYISGKGIKS IHGMIFLFTL IMPLDIISAN FSVSFKDVDI KEFINSVSKN INKTIIIDPT 
VQGLISIRSY ETLDKDTYYQ LFLNVLDVYG YAAIEMPHNV LKVISSKRAK GVVAPLPKEG 
VTFDGDELIN RVIPLRYISA KKITPLLRQL NDNTESGSII NYDPSNILLI TGRAAVVNRL 
HSIVTDLDQA GDNEIELYKL NYAIAADVVK IVNEAINPIN NLKQEVSIVG KVIADERTNS 
ILISGDTYIR KKSILMIKKL DKRQSSDGNT KVVYMKYAQA SKLLDVLNGI SEGFHNEKKT 
KQSNQWNQRP VAIKAYDQTN ALVITADPDM MLALGEVIEK LDIRRAQVLV EAIIVETQNG 
EGINLGVKWE NKRSDDINFI KNSDGLLNNN GWGIATTITG LTAGFYKGNW DVLLSALSTN 
KNNNILATPS IVTLDNMEAE FNVGQEVPVL ISTQTTTTDK VYNSISRQSI GVMLKVKPQI 
NKGDSVLLEI RQEVSSIADS STVNTHNLGS VFNKRVVNNA VLVKSGETVV VGGLLDKKSS 
TIVNKVPFLG DLPLIGWLFR QTKEKVEKSN LILFIKPTIL RESDDYSVVT SKEYNKYKKD 
NMNGYTLADD IVLSDKKYLS VIPSIRKDIN NFYTLLDSEL