Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_0086 |
Symbol | |
ID | 6087446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 99670 |
End bp | 101433 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641595146 |
Product | polypeptide-transport-associated domain-containing protein |
Protein accession | YP_001718852 |
Protein GI | 170022347 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATTTA AAATAAATGT GAGGTGGAGG GATAAAATTG GAGATTTTTG GTGGGGGATA TTGTGCCTAT TATATCTTCA AATTATGATT GGGATGCTTC CGTTTAAAGT TTTTGCTGAA ATGGCGTTGC CAGAAATGGA CCTGCTTGAA ATGGATATAG CCGAGCCGCA GATCCCAAAT AGTATTATTC CTCCTCTATC ACATGCTCAA CTGGCCAGTG AACCGGTTCT GCCAGAGAAT CTTTATAATG ATGAAGTACA ATGTGTAGCA ATTAATAATG TCGAATTGAT TAATCTTGAT GCTTTCCCAA ATGCAGCTCA CTTAAAAGAA AAGGCTGAAG AAGCTCACGG GCGTTGCTTG GGGGAACAGG GGCTGTCAGT GCTTGTGGCT AACTTACAGC AACAATTAGT GGTTGATGGC TATATCACGT CTCGTGTGGT TTTTGTCGAT GACAGTGAGC GTGACGGTAC TTTAATGCTG AAATTAATGC CCGGCAGGAT TGAGGATATC AGGCATCATC AAGATAGCGT CGGCAATGCT CATCTCAGCT CCCTTTTCCC CGGTAAACGT GGTGATTTGG TTAATTTACG CCATCTTGAG CAAGGATTAG AAAACTTGCA GCGTTTGCCT TCAGTGAATG CCACCCTGGA TGTCGAATTA AACCGGGAAG ATTTAAGCAG CCAGATTATC GTGAATCGCC AGCAATCACG TCTCTGGCGT ATTAATGCCT ACCTTGATGA TGCGGGGCAT GATGCCGTTG GCCGCTATCG TACGGGCCTG ATATTGTCTT TTGATAATCC ATTATCCCGT TATAACCCCT TGTCTCTCAG TGATTTACTC TACTTCTCTG TTAACCGTGA CCTTGATAGC CAACCCGATA AAGGGCACAA CAGCTACGGG GTTCATTATT CTGTCCCGTA TGGCAACTGG CTATTTAGCA TGACGGGCAA TCAAGGTGAG CGTTATCAAT CGTTCTCTTT TGCCGGTAAA AGACTTGCCG GTAAAAAATT TGGCTATCGT TCCCATTGGT CTGTATTGGA TACACAAATT CAACATTTAC TCACCCGTGG AGTAAATTAT AAAACAGTGG GTTATGCCGG GGTGTTAATT CGTCAGTCTG CCAGTTTTTG GACCCATCGG GAGATAGATA TTCAGCGGTT CAATACCACG GACTGGCAGC TAGGGATTGA GCATCTACAT TACATGCCAT GGGCGACTTT CAGAGGGGGG GTTCGTTATC AACAGGGGGC TTCATGGTTT GGTGCCCAAC CTATTCCCGG TAAAATGAGC ACTGCACCGG CGAGGTTGGT CGATATCACC AGCTCACTGG ATATCCCTTT TAAGATCGGA ACACAGTCCT TCCAGTATCG GCCCGCTTTC AGCCAGCAAC ATACCTACTC GGATATTAGT TCACTGGATA AATTTACGAT TGGTGGCAGG AGTTCAGTGC GAGGTTTTAA TGAGAATAAC GCTCTGACGG GGTCGCGGGG GTGGTCTCTA AAAAATGATA TTTCATGGAT CAGCCCGATA CCCGGCCAGA CATTCGTGGG CCAGCAATTC TATATCGGCA TGGATTATGG TGAGGTGAGT GAGCAGGGCC AACCATTTCT TTTGGGCGAG CGTTTAGCGG GGGCCGTGGT AGGGACTCGT GGAAATTATC ATGCGTTTGG TTACGATTTT AATGTCGGCG TGCCGATAAC CAAACCCGCT GAATTTGATG CTGATCCGTT GGTTTTTGGG TTTACGCTAA CTTGGCAATA TTAG
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Protein sequence | MTFKINVRWR DKIGDFWWGI LCLLYLQIMI GMLPFKVFAE MALPEMDLLE MDIAEPQIPN SIIPPLSHAQ LASEPVLPEN LYNDEVQCVA INNVELINLD AFPNAAHLKE KAEEAHGRCL GEQGLSVLVA NLQQQLVVDG YITSRVVFVD DSERDGTLML KLMPGRIEDI RHHQDSVGNA HLSSLFPGKR GDLVNLRHLE QGLENLQRLP SVNATLDVEL NREDLSSQII VNRQQSRLWR INAYLDDAGH DAVGRYRTGL ILSFDNPLSR YNPLSLSDLL YFSVNRDLDS QPDKGHNSYG VHYSVPYGNW LFSMTGNQGE RYQSFSFAGK RLAGKKFGYR SHWSVLDTQI QHLLTRGVNY KTVGYAGVLI RQSASFWTHR EIDIQRFNTT DWQLGIEHLH YMPWATFRGG VRYQQGASWF GAQPIPGKMS TAPARLVDIT SSLDIPFKIG TQSFQYRPAF SQQHTYSDIS SLDKFTIGGR SSVRGFNENN ALTGSRGWSL KNDISWISPI PGQTFVGQQF YIGMDYGEVS EQGQPFLLGE RLAGAVVGTR GNYHAFGYDF NVGVPITKPA EFDADPLVFG FTLTWQY
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