Gene Daud_1027 details

Gene Information

• Locus tag: Daud_1027
• ID: 6025974
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Candidatus Desulforudis audaxviator MP104C
• Kingdom: Bacteria
• Replicon accession: NC_010424
• Strand: +
• Start bp: 1075953
• End bp: 1077857
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641593839
• Product: deoxyxylulose-5-phosphate synthase
• Protein accession: YP_001717171
• Protein GI: 169831189
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGGATTGC TGGACGGAAT AAGCCACTTG ACCGATCTCC GGGCGCTGAC CCCGGATCAG 
CTTGACGAAC TCGCCGCCGA GCTCCGCGAT CTGATTGTGT CCACCGTCTC CCGCACCGGC 
GGGCATCTGG CCCCCAACCT GGGAGTCGTC GAACTGACGC TGGCCCTGCA CTACGTATTC 
CGGGCTCCCG ACGACCGGAT CGTCTGGGAC GTAGGCCACC AGTGCTATGT GCACAAAATT 
CTCACCGGCC GCAAGTCGCA GTTTCACACC CTGCGCCAGT TCGAAGGCTT GAGCGGGTTT 
CCGAACCGGA ACGAAAGCGA GTACGACTGC TTCGGCACCG GGCACAGCAG CACCTCGATT 
TCCGCCGCGC TGGGCATGGC TCTTGCCCGG GATTTAAGCG GGGAGGACCG AAACGTGGTG 
GCAGTGATCG GGGACGGTGC ACTTTCGGGC GGGATGGCCT TCGAAGCGCT GAACCAGGCC 
GGTCACCTGG GATGCCGGCT CATTGTCGTT TTAAACGACA ACGAAATGTC CATTGCCAGA 
AACGTGGGCG CCATGGCCCG TTACCTCTCC CGGCTGCGCA CCGACCCAAT GTACTCTCGG 
AGCAAGGACG AAGTGGAGTC GCTCTTGCGG CGGATCCCCG CCATCGGTCC ACGGGTGCTC 
GGCTGGATTG AACGTATCAA GGACAGTCTG AAATACCTGG TGGTCGCCGG GATGCTGTTT 
GAGGAGTTGG GTTTCACTTA CCTGGGCCCG ATCGACGGAC ACAATATCCC CGCGATGCTG 
AACGTGTTCC GGCAGGCCCA GGCGGTTGAA GGTCCGGTGC TGGTGCACGT CCTGACCAAA 
AAGGGCAAAG GATATGCCCC GGCCGAGAAA AACCCGGATA AGTTTCACGG GGTCGGCCCG 
TTCGACCCGG CAACGGGGAA TACGCCTACC GACGCCAGGG TTTCGTTCAC CGAAGTATTC 
GGCCGGACAC TGGTTCAACT GGCCGAAGCG GACAGCCGCA TCCTGGCGAT CACCGCTGCA 
ATGACGTCGG GTACCGGCCT GGGGCCGTTT TCACGCCGGT TCCCGCAGCG TTTCTTTGAC 
GTGGGGATCG CGGAGCAGCA CGCGGTCACT CTGGCCGCCG GGCTGGCGGT TGAAGGCTAC 
CGTCCGGTGG TGGCCATATA TTCCACCTTC TTGCAGCGGG CCTACGATCA GGTGCTGCAC 
GACGTGTGTC TCCAGAAGCT TCCCGTGGTG TTCGCCCTGG ACCGGGGTGG GATCGTCGGC 
GAAGACGGTG TCACCCACCA GGGAGTGTTC GATTTCTCCT TCCTGCGCCC GGTTCCCAAC 
CTGGTGATGA TGGCCCCGAA AGACGAAAAC GAATTCCAGC ACATGCTGAA AACGGCCGTG 
GAACACGAGG GTCCGATCGC CGTGCGCTAC CCGCGGGGCA CGGGAACGGG CTGCGCGCTG 
GACCAGGATC TCGTGGCGTT GCCCATCGGA CGGGCGGAAG TGCTCCGCGA AGGGGACGAT 
ATTACGTTGA TCGCTATCGG AAACATGGTG CCGACGGCGG TCAAAGCCGC CGAAATTCTG 
GCTGAACGGG GAATAGAAGC GTCCGTGGTC AACGCCCGGT TCGTGAAGCC GCTGGACGAG 
AAGTGCATCT GCCATTACGC CCGCCGCACC GGGCGCCTGA TCACATTGGA GGAAAACGTG 
ATCGCCGGCG GATTCGGCAG TGCCGTTCAG GAACTCCTTG TCGCTAAGGG CCTTACCGAC 
GTCCGGGTAC AGTTGATCGG CCTTCCCGAT GTGTTTATCG AGCACGGTGC CCCGCACCTG 
CTGCGGGCCA AGTACGGGTT GACCGTGGAC CGCGTGGTCC GCACGGCGGA AAGTGAGAAA 
AGAAAGCGGG CCAGGCTGAA GCTGGCGCCG AGGTTGCTGA GGTAA 

 

Protein sequence

MGLLDGISHL TDLRALTPDQ LDELAAELRD LIVSTVSRTG GHLAPNLGVV ELTLALHYVF 
RAPDDRIVWD VGHQCYVHKI LTGRKSQFHT LRQFEGLSGF PNRNESEYDC FGTGHSSTSI 
SAALGMALAR DLSGEDRNVV AVIGDGALSG GMAFEALNQA GHLGCRLIVV LNDNEMSIAR 
NVGAMARYLS RLRTDPMYSR SKDEVESLLR RIPAIGPRVL GWIERIKDSL KYLVVAGMLF 
EELGFTYLGP IDGHNIPAML NVFRQAQAVE GPVLVHVLTK KGKGYAPAEK NPDKFHGVGP 
FDPATGNTPT DARVSFTEVF GRTLVQLAEA DSRILAITAA MTSGTGLGPF SRRFPQRFFD 
VGIAEQHAVT LAAGLAVEGY RPVVAIYSTF LQRAYDQVLH DVCLQKLPVV FALDRGGIVG 
EDGVTHQGVF DFSFLRPVPN LVMMAPKDEN EFQHMLKTAV EHEGPIAVRY PRGTGTGCAL 
DQDLVALPIG RAEVLREGDD ITLIAIGNMV PTAVKAAEIL AERGIEASVV NARFVKPLDE 
KCICHYARRT GRLITLEENV IAGGFGSAVQ ELLVAKGLTD VRVQLIGLPD VFIEHGAPHL 
LRAKYGLTVD RVVRTAESEK RKRARLKLAP RLLR