| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0562 |
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| Symbol | |
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| ID | 6027328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | + |
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| Start bp | 600494 |
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| End bp | 603259 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641593398 |
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| Product | DNA polymerase III, epsilon subunit |
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| Protein accession | YP_001716735 |
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| Protein GI | 169830753 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01407] DnaQ family exonuclease/DinG family helicase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCCCGCA CGTTTGTGGT GCTGGACTTG GAAACCACCG GCCTCGATCC TCAAGCAGAC
GAGATTGTTG AGGTCGGCTT GGTGCGTGTC GAGGACGGGA AGCCCGGAGC GGTTTTCCAC
GCCCTGGTGC GCCCCTCGCG ACCTTTGCCG GCGCGGATCA AGAGCCTGAC CGGCCTGGAC
GATGCCGACC TGGCGGAAAG GCCGGATTGG TCCGAAGTGC GCCCGGCGGT GACCGCCTTC
CTCGGGAATG AGCCGGTGGT CGGGCACCAC GTGCATTTTG ACCTGGCCTT CCTGGAAAGG
CACGCCGGGT ACCGGGCAAC GCAGGCGTAC GACACCGTGG ACCTGGCGCG GCTGGTGCTG
CCCGGACTGC CGTCGTACCG CCTGGAGTTG CTGTGTGCGC ACCTGGACCT GCCTGAACGG
CCGGGCCACC GCGCCATGGA GGACGCCCGG GCGGCGGCCG GGCTGTTCAC GGCGCTCCTG
GAAAGGTTTT GCCGCCTCGA ATTCACCACC CAGGCCACGG TGCACCGCAT CCTGTCCCAG
ACCCCCGGTT CTCCCTGGTT CCCGCTGGTG GACGCGGCGG TGCGGTTGGG GATCAAGACC
CTTCCGGACC ACGGAATCCA GGCGGCAGGC GACGGTGATT GGCCCGCCGC GGTTCCGGCG
GTCGGGGCCG GGGTCAAGAC CGTACCCGGG TTCGGCCCGC AGGCCGTTGA AGCGTTCCTG
GGGCCCGGCG GTGTGCTGAC CCGTCACTTC GCCGACTTTG AATACCGGCG GCCGCAAATG
CAGGTTGCAC TGGCGGTGGG CCGGGCGCTG GAGGAGCAGA CCGTCCTCAC GGTGGAAGCC
GGCACCGGGA CCGGCAAGTC TTTCGCCTAC CTGGTGCCGG CCGCGCTCTG GGCCCTGGAC
GGGGGACGCC GGGTGGTGGT GTCGACCCAT ACGGTCAACC TTCAGGACCA GTTGATGGAA
AAAGACCTAC CGCTTCTCGG CCGGGCGCTA GACGCGCCGC TCAAGACCGT GCTCCTGAAA
GGCCGGGGGC ACTATCTCTG CCTGCGGCGT TGGGGAGCGG CCGTGAATGA ACAGAGCTTT
TTACCCGACG AGGGCTTCTT GTATGCCCGC ATTGCGGTGT GGCTGGCCCG GACGAAAACC
GGAGACCGGG CCGAACTCAG CCTGCGGCCG GAGGAAAAGG GATTCTGGGA CGGAGTGGCC
GCGGGAGACT GGGGCTGCGC GCACGCGTAC TGCCGTTTCA ACAGTGTCTG TTTCTTGCAG
CGGGCCCGGC GGGCCGCCGA ACAGGCGCAC CTGGTGATCA CCAACCATTC ACTCCTGCTT
TCCGACCTGA AGATGGAAAA CCGACTGCTG CCGGCATACG ACGCCCTGGT GCTGGACGAA
GCACACCACC TCGAGGGGGT GGCCACCGAG CAACTGGGGA CCACCGTATC GCGGGGCGCG
CTGGAACGGT GGGTGGAGGG GCTGAACCGG CTGACCGGAA GAATCGGCGA GTTCTACCCG
GACAACCGGG ATGAGTTTCT CCGGGACGGG GAGGCACTGC TGGCGGCGGT ACGGCGTTTT
TTCGCCCTGC TGGGTGCGCG TCTGCGGCGG CGGGAACTTC CGGAGGAAGA CTTTGCGGCG
GAGCGCCTCG GTCCGCGGGC CCTGGACGCG TGCCCGGAAA CGGCGGGAAG TTACCTTGAA
CTTGCCGGGA GTCTGAAAGC CTACGTGCAA CGGCTGTCTA GGGCGGTCGA GCGGCTGACC
GACAGCACCG TGCCGGCGGT TCAGGAGGAA CTGCGGGTGG GGCTCGAGCA GGAGTTGGCG
GTTGGCAAGC GCTTGGCCAG CGACCTGGAG TTCGTATACG AGGCCGCCGA TCCCGGGTAT
GTTTTCTGGC TCGAGGGCGG GGGGCGGCAG ACCGCCGAGG GCGTGCTCCG CGCGGCGCCG
GTCCACGTAG GGGAGCTCTT GCACGACGGC TTCTTCCGCT CCGGCAAGCC GGTCATTCTC
ACTTCGGCCA CACTCACCGT CCAAAGTTCG TTCTCCTTTT TTGACGAGCG GGTGGGGCTT
GAGCATTTGC CGCGGGACCT GCGGGGCAGC CTGATCGTTG GTTCTCCTTT CGCCTATGCC
GAACAGGCCC TGCTGTACGT GGTGACCGAC CTGCCCGACC CGGGAGACGG GGACGGGGCC
TACCTGGACG CCGTCAGCGA TGCCCTCGGG CGGATCGTCG GGGTCACCCG GGGCCGGACG
CTTGCACTAT TTACCGCACA TAAAGCGTTG CGCACCGCAT ATAGAAGACT GAAACCCGTC
TTGGAAAAGC AAGGCTTGGA ACTGTTGGGT CACGGCCTGG ACGGGGGGCG GGCGCGTCTT
TTGCAGTATT TCCGCAACAC ACCCCAGGCG GTGCTGTTTG GGGCCTCCAG TTTTTGGGAA
GGGGTGGACG TTCCGGGGGA CGCGCTGTCC TGCCTGGTGA TTGTGAAACT CCCGTTTGAA
CCGCCCAACC GCCCTGTGCT CCAGGCGCGG CGCGAGGAGG TCCGCCGGCG GGGCCGGAGT
GACTTCAACG ACCTGTGCCT ACCGCAAGCC GTGCTCCGCC TGAAACAGGG TTTTGGACGC
CTGATCCGTA CCACCGCGGA CCGGGGCGTG GTGATTATTT TGGATAACCG GCTGGTACGG
AAAAGGTATG GCGCCCTGTT TTTGGAGTCC CTGCCGGCGG CGCCGATGCA CGGGTCCCTG
GAGGCAGGGC TGGAAGCGAC GGCCGCGTTT CTTTTTGACG GCACGTTTGC GGCTTCAAAG
CCATAA
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| Protein sequence | MSRTFVVLDL ETTGLDPQAD EIVEVGLVRV EDGKPGAVFH ALVRPSRPLP ARIKSLTGLD
DADLAERPDW SEVRPAVTAF LGNEPVVGHH VHFDLAFLER HAGYRATQAY DTVDLARLVL
PGLPSYRLEL LCAHLDLPER PGHRAMEDAR AAAGLFTALL ERFCRLEFTT QATVHRILSQ
TPGSPWFPLV DAAVRLGIKT LPDHGIQAAG DGDWPAAVPA VGAGVKTVPG FGPQAVEAFL
GPGGVLTRHF ADFEYRRPQM QVALAVGRAL EEQTVLTVEA GTGTGKSFAY LVPAALWALD
GGRRVVVSTH TVNLQDQLME KDLPLLGRAL DAPLKTVLLK GRGHYLCLRR WGAAVNEQSF
LPDEGFLYAR IAVWLARTKT GDRAELSLRP EEKGFWDGVA AGDWGCAHAY CRFNSVCFLQ
RARRAAEQAH LVITNHSLLL SDLKMENRLL PAYDALVLDE AHHLEGVATE QLGTTVSRGA
LERWVEGLNR LTGRIGEFYP DNRDEFLRDG EALLAAVRRF FALLGARLRR RELPEEDFAA
ERLGPRALDA CPETAGSYLE LAGSLKAYVQ RLSRAVERLT DSTVPAVQEE LRVGLEQELA
VGKRLASDLE FVYEAADPGY VFWLEGGGRQ TAEGVLRAAP VHVGELLHDG FFRSGKPVIL
TSATLTVQSS FSFFDERVGL EHLPRDLRGS LIVGSPFAYA EQALLYVVTD LPDPGDGDGA
YLDAVSDALG RIVGVTRGRT LALFTAHKAL RTAYRRLKPV LEKQGLELLG HGLDGGRARL
LQYFRNTPQA VLFGASSFWE GVDVPGDALS CLVIVKLPFE PPNRPVLQAR REEVRRRGRS
DFNDLCLPQA VLRLKQGFGR LIRTTADRGV VIILDNRLVR KRYGALFLES LPAAPMHGSL
EAGLEATAAF LFDGTFAASK P
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