| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3979 |
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| Symbol | alaS |
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| ID | 5871779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4424896 |
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| End bp | 4427589 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549107 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001670205 |
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| Protein GI | 167034974 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.567891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCCCT TTGCCGTCGT TTCGTCGACG TGTTTGCCCA ACAGGGCCGC CGTTTCCGTG
GAAGAACCTA TGAAAAGCGC AGAAATCCGT GAAGCCTTCC TTCGCTTCTT CGAAGAGCAA
GGCCATACCC GAGTCGCCTC CAGTTCGCTG ATCCCGAACA ACGACCCGAC CCTGCTGTTC
ACCAACGCAG GCATGAACCA GTTCAAGGAC TGCTTCCTCG GTGCAGAGAA GCGCGCCTAC
ACCCGCGCCG TCAGCAGCCA GAAGTGCGTG CGCGCCGGTG GCAAGCACAA CGACCTGGAA
AACGTCGGTT ACACCGCGCG TCACCACACC TTCTTCGAAA TGCTGGGCAA CTTCAGCTTC
GGTGACTATT TCAAGCGCGA TGCCATCACC TTCGCCTGGA CCTTCCTGAC CTCGGAGCAG
TGGCTGAACC TGCCCAAGGA AAAGCTCTGG GTCACTGTCT ACGCCACTGA CGACGAAGCC
TACGACATCT GGACCAAGGA AGTCGGCGTG CCGGCCGAGC GTATGGTGCG CATCGGCGAC
AACAAAGGCG CCCCGTACGC CTCCGACAAC TTCTGGACCA TGGGCGACAC TGGCCCGTGC
GGCCCATGCA CCGAGATCTT CTACGACCAC GGCCCGGACA TCTGGGGCGG CCCACCCGGC
TCGCCAGAAG AAGACGGCGA CCGCTACATC GAGATCTGGA ACAACGTCTT CATGCAGTTC
AACCGCACCG CCGATGGCGT GCTGCACCCG CTGCCAGCGC CGTCGGTGGA CACCGGCATG
GGCCTGGAGC GTGTCAGCGC CGTGCTGCAG CACGTGCACT CGAACTACGA GATCGACCTG
TTCCAGAACC TGCTGGCGGC CGCGGCCAAG GCCATCGGTT GCAGCAATGA CGGCCAGGCC
TCGCTGAAAG TCGTCGCCGA CCACATTCGT TCCTGCGGCT TCCTGATTGC CGACGGTGTG
CTGCCGTCCA ACGAAGGCCG TGGCTACGTG CTGCGCCGCA TCATTCGCCG CGCTTGCCGT
CACGGTAACA AGCTGGGCGC CAAGGGCAGC TTCTTCTACC AGATCGTTGC GGCACTGGCT
GCTGAAATGG GCGAAGCCTT CCCGGAACTG AAGAGCCAGC AAGCGCACAT CGAGCGCGTG
CTCAAGGCCG AAGAAGAGCA GTTCGCCAAG ACCCTGGAGC AGGGCCTGCG TATCCTCGAG
CAAGACCTGG CCCAGCTCAA AGGCGACGTG GTGCCGGGCG ACGTGGTGTT CAAGCTGTAC
GACACCTACG GCTTCCCGAT GGACCTGACT GCCGACATTG CCCGTGAGCG TGAACTGACC
ATCGACGAAG CCGGCTTCGA GCGCGAGATG GATGCCCAGC GTGAGCGTGC CCGTTCCGCC
AGCGCCTTCG GCATGGATTA CAACAGCCTG GTTAAAGTCG ACAGCGCCAC CGAATTCCTC
GGTTACGACG CCACCGAAGC CCAAGGCAAG ATCATTGCCC TGTACAAGGA CGGCCAGGCC
GTCGACCAGT TGGGTGAAGG CGAGCAGGGC GTGGTCGTGC TCGACCGCAC GCCGTTCTAC
GCCGAGTCCG GCGGCCAGGT GGGTGATACC GGCTTCCTGC AGGCTGGCGC TGCACGCTTC
GACGTGCGCG ACACCACCAA AACTGGCGGT GCCTTCCTGC ACCACGGTGT GGTCGCCAGC
GGTGCGCTGG TGATCGGTTC GCCAGTCGAG GCCAAGGTCG ATGCCGACGT GCAGCATGCC
ACCTCGCTGA ACCACTCCGC CACTCATCTG TTGCACGAAG CGCTGCGTCA GGTATTGGGC
GAGCACGTGC AGCAGAAGGG CTCGCTGGTC GACAGCCAGC GCCTGCGTTT CGACTTCAGC
CATTTCGAAG CGCTGAAGCC AGAGCAGATC AAGCAACTGG AAGACATCGT CAACCGCGAA
GTGCGCAAGA ACACTGCCGT TGAAACCGAA CTGACCGACA TCGAAACCGC CAAGGCCAAA
GGCGCCATGG CGCTGTTCGG CGAGAAGTAC GGCGACACTG TGCGCGTGTT GAGCATGGGC
GGCGATTTCT CGGTGGAGCT GTGCGGCGGT ATCCACGCCA AGCGCACCGG TGACATCAGC
CTGTTCAAGA TCATCAGCGA AGGCGGCGTG GCCTCTGGCG TGCGCCGTAT CGAAGCGGTG
ACCGGCGCCG CTGCGCTGGC CTACCTGAAC GCTGCCGAAG AGCAGGTCAA GGAAGCCGCG
CAACTGGTCA AAGGCAACCG CGACAACCTG ATCGACAAGC TGTCGGCTGT GCTTGAGCGC
AACCGCCAGC TGGAGAAGCA GCTTGAACAA CTGCAGGCCA AGGCCGCCAG CGCCGCCGGG
GACGATCTCT CCAACGCGGC CGTTGAGGTC AAAGGTGCCA AGGTGCTCGC CGCCCGCCTG
GATGGGCAGG ACGGCAAGGC CCTGCTGGCC CTGGTCGATC AGCTGAAGAA CAAGCTCGGC
CACGCAGTGA TCCTGCTGGG CAGCGAGCAT GAGGGCAAGG TCGTGCTGGT GGCCGGCGTG
ACCAAGGACC TCTCCAGCCA ACTCAAGGCT GGCGATCTGA TGAAACAAGC CGCTGCGGCG
GTGGGTGGCA AGGGCGGTGG CCGTCCGGAC ATGGCCCAGG GTGGTGGCGT CGACGTCGCC
GCGCTGGACC AGGCCCTGGC GCTGGCCGTG CCATTCGCAG AGCAGGGACT TTGA
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| Protein sequence | MRPFAVVSST CLPNRAAVSV EEPMKSAEIR EAFLRFFEEQ GHTRVASSSL IPNNDPTLLF
TNAGMNQFKD CFLGAEKRAY TRAVSSQKCV RAGGKHNDLE NVGYTARHHT FFEMLGNFSF
GDYFKRDAIT FAWTFLTSEQ WLNLPKEKLW VTVYATDDEA YDIWTKEVGV PAERMVRIGD
NKGAPYASDN FWTMGDTGPC GPCTEIFYDH GPDIWGGPPG SPEEDGDRYI EIWNNVFMQF
NRTADGVLHP LPAPSVDTGM GLERVSAVLQ HVHSNYEIDL FQNLLAAAAK AIGCSNDGQA
SLKVVADHIR SCGFLIADGV LPSNEGRGYV LRRIIRRACR HGNKLGAKGS FFYQIVAALA
AEMGEAFPEL KSQQAHIERV LKAEEEQFAK TLEQGLRILE QDLAQLKGDV VPGDVVFKLY
DTYGFPMDLT ADIARERELT IDEAGFEREM DAQRERARSA SAFGMDYNSL VKVDSATEFL
GYDATEAQGK IIALYKDGQA VDQLGEGEQG VVVLDRTPFY AESGGQVGDT GFLQAGAARF
DVRDTTKTGG AFLHHGVVAS GALVIGSPVE AKVDADVQHA TSLNHSATHL LHEALRQVLG
EHVQQKGSLV DSQRLRFDFS HFEALKPEQI KQLEDIVNRE VRKNTAVETE LTDIETAKAK
GAMALFGEKY GDTVRVLSMG GDFSVELCGG IHAKRTGDIS LFKIISEGGV ASGVRRIEAV
TGAAALAYLN AAEEQVKEAA QLVKGNRDNL IDKLSAVLER NRQLEKQLEQ LQAKAASAAG
DDLSNAAVEV KGAKVLAARL DGQDGKALLA LVDQLKNKLG HAVILLGSEH EGKVVLVAGV
TKDLSSQLKA GDLMKQAAAA VGGKGGGRPD MAQGGGVDVA ALDQALALAV PFAEQGL
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