Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3781 |
Symbol | |
ID | 5871574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4205021 |
End bp | 4206244 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641548903 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001670007 |
Protein GI | 167034776 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTGA CCCTGGCTAC GCATACCCAC ACCCCTTGGC TGGATGTCTG CATGAGACCT TTAACCAACA CCCGTCGCCG TGTGCTGCTC ACTGGCCTGG GCCTGCTCGG CCTCGGCAGC CTGCTGGCCT GGAAGGCGCT GCCCTATGGC GCGCAGCCGC TGAGCACCGT CGCCGTAACC CGCGCCGACA TCGAAAGCAG CGTGACCGCG CTGGGCACCT TGCAACCGCG ACGTTACGTG GACGTTGGCG CCCAGGCCTC CGGGCAGATC CACAAGCTGC ACGTTGAAGT CGGCGACAGT GTGCGCAAAG GCCAGTTGCT GGTCGAGATC GACCCTTCCA CCCAGCAGGC GCGGCTGGAT GCCGGGCGCT TCTCGATCGA CAACCTCAAG GCCCAGCTGG CCGAACAACG CGCGCAGTAC CTGTTGGCCC AGCAGCAGCT CAAGCGCCAG CGCGACCTGG CCGCCGCCGG CGCCACCCGA GACGAAGACG TGCAAACCGC CGCCGCGCAG TTGAAAGTCA CCCAGGCGCG CATCGACATG TTCCTGGCGC AGATCCGCCA GGCCCAGGCC AGCCTGCGCA GCGACGAAGC CGAGTTAGGC TACACGCGCA TCTACGCGCC CATGGACGGC ACGGTGGTGG CAGTGGATGC CCGCGAGGGG CAAACCCTCA ACGCCCAGCA GCAAACCCCA TTGATCCTGC GCATCGCCAA GCTTTCGCCA ATGACCGTGT GGGCCCAGGT GTCAGAGGCC GACATCGGCA AGGTCAAACC GGGCATGACC GCCTATTTCA CCACCCTGGC CGGCGGCAAA CGCCGCTGGA CCAGCACCGT GCGGCAAGTG CTGCCAATCC CGCCCAAGCC CCTGGAGCAG GCCAGCCAGG GCGGCGGCAG CCCGGCCAGC GTCAGCAATG GCAGCGCCGG CAGCCAGGTG GTGCAGTACA GCGTGCTGCT GGATGTCGAC AACCCGGACG GCGCGCTGAT GGCCGAGATG ACCACGCAAG TGTTCTTCGT TGCAGGCACC GCCAGCCAGG TGCTGACCGT GCCGCTGGCC GCGCTGGATG ACGGCGACGG CCTGCGCCTG GCGCGTGTGC TGACCGGCGA CGGCAAGGTG GAACAGCGCC AGGTGCGCAC CGGGCTCAGC GACCGTTTGC GGGTACAGGT GCTGGACGGC CTGAGCGAAG GCGAGCGCCT GGTCATCGGC GCCCCCGCCG TGAGTGGAGG CTGA
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Protein sequence | MRLTLATHTH TPWLDVCMRP LTNTRRRVLL TGLGLLGLGS LLAWKALPYG AQPLSTVAVT RADIESSVTA LGTLQPRRYV DVGAQASGQI HKLHVEVGDS VRKGQLLVEI DPSTQQARLD AGRFSIDNLK AQLAEQRAQY LLAQQQLKRQ RDLAAAGATR DEDVQTAAAQ LKVTQARIDM FLAQIRQAQA SLRSDEAELG YTRIYAPMDG TVVAVDAREG QTLNAQQQTP LILRIAKLSP MTVWAQVSEA DIGKVKPGMT AYFTTLAGGK RRWTSTVRQV LPIPPKPLEQ ASQGGGSPAS VSNGSAGSQV VQYSVLLDVD NPDGALMAEM TTQVFFVAGT ASQVLTVPLA ALDDGDGLRL ARVLTGDGKV EQRQVRTGLS DRLRVQVLDG LSEGERLVIG APAVSGG
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