| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3533 |
|---|
| Symbol | |
|---|
| ID | 5871322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3936559 |
|---|
| End bp | 3938121 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641548652 |
|---|
| Product | alkyl hydroperoxide reductase, F subunit |
|---|
| Protein accession | YP_001669760 |
|---|
| Protein GI | 167034529 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
|---|
| TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.463079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.050661 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGACG CCACGCTTAA ATCGCAACTG AAAACCTACC TGGAGCGGGT CACCCAGCCG
ATCGAGATCG TTGCCTCCCT CGACGACGGC GCGAAGTCCC GCGAATTGCA TGACTTGCTG
GTGGAAATTG CCGGCCTGTC GAACCTCATT ACATTCAGCG CGGACGGTAC CGATGCCCGT
CGCCCGTCGT TCTCGCTGAA CCGCCCGGGT GACAGCATCA GCCTGCGCTT CGCCGGCATC
CCCATGGGCC ACGAGTTCAC CTCGCTGGTG CTGGCGCTGC TGCAAGTCGG CGGCCACCCA
TCCAAGGCCA GTGCTGAAGT GATCGAGCAG ATCCAGGCCC TGGAAGGCGA ATTCACCTTC
GAAACCTACT TCTCGCTGTC GTGCCAGAAC TGCCCGGACG TGGTCCAGGC GTTGAACCTG
ATGGCGGTGC TCAACCCCAA CGTGCGCCAT GTGGCCATCG ACGGTGCGCT GTTCCAGGAA
GAAGTGGAAG CGCGCAAGAT CATGGCGGTG CCGAGCATCT ACCTGAACGG TGAAGTGTTT
GGCCAGGGCC GCATGGGCCT GGAAGAAATC CTTGGCAAGA TCGACACCAG CGCCGGCGCC
CGCCAGGCCG AGAAGATCAA CGCTAAGGAC GCCTTCGACG TGCTGGTGGT CGGCGGTGGC
CCCGCTGGCG CCGCTGCTGC CATCTATGCT GCGCGTAAAG GCATCCGCAC TGGCGTTGCA
GCCGAGCGCT TCGGCGGCCA GGTGCTCGAC ACCCTGGCCA TCGAGAACTT CATCTCGGTG
CAGGAAACCG AAGGGCCTAA GCTGGCCACG GCGCTGGAAG AGCACGTCAA GCAGTACGAC
GTCGACATCA TGAACCTGCA GCGCGGCGAA GCGTTGATTC CGGCCAGCGA GGGTGGCTTG
CACGAAGTAC GCCTGGCAGG CGGTGCCTCG CTGAAAGCCA AGACCGTGAT CCTGGCCACC
GGCGCCCGCT GGCGTGAAAT GAACGTGCCA GGTGAGCAGG AATACCGTGG CCGTGGCGTG
GCCTACTGCC CGCACTGTGA TGGCCCCCTG TTCAAGGGCA AGCGCGTAGC GGTGATCGGC
GGCGGCAACT CGGGCGTGGA GGCGGCCATC GACCTGGCCG GTATCGTCGC CCAGGTGACG
CTGATCGAGT TCGACAGCCA ACTGCGTGCC GACGCGGTTT TGCAGCGCAA GTTGCACAGT
TTGCCGAACG TGAAAGTCAT TACCAGCGCG CTCACCACCG AGGTGCTGGG CAATGGCGAG
AAAGTGACTG GCTTGCGCTA CAAGGACCGC ACCACCGATG AACAGCATGA CGTGGCGCTG
GAAGGTATCT TCGTGCAGAT CGGACTGTTG CCCAACACCG ACTGGCTCAA AGGCACCGTC
GAGCTGTCGC CGCGTGGCGA GATCATCGTC GACGCCAAGG GCCAGACCAG TATCCCGGGT
GTGTTTGCAG CGGGTGACGT GACGACCGTG CCGTACAAGC AGATCGTGAT TGCGGTGGGT
GAGGGGGCCA AGGCTTCGCT GGCGGCCTTC GACCACCTGA TTCGCACTTC GGCGCCGGCG
TAA
|
|---|
| Protein sequence | MLDATLKSQL KTYLERVTQP IEIVASLDDG AKSRELHDLL VEIAGLSNLI TFSADGTDAR
RPSFSLNRPG DSISLRFAGI PMGHEFTSLV LALLQVGGHP SKASAEVIEQ IQALEGEFTF
ETYFSLSCQN CPDVVQALNL MAVLNPNVRH VAIDGALFQE EVEARKIMAV PSIYLNGEVF
GQGRMGLEEI LGKIDTSAGA RQAEKINAKD AFDVLVVGGG PAGAAAAIYA ARKGIRTGVA
AERFGGQVLD TLAIENFISV QETEGPKLAT ALEEHVKQYD VDIMNLQRGE ALIPASEGGL
HEVRLAGGAS LKAKTVILAT GARWREMNVP GEQEYRGRGV AYCPHCDGPL FKGKRVAVIG
GGNSGVEAAI DLAGIVAQVT LIEFDSQLRA DAVLQRKLHS LPNVKVITSA LTTEVLGNGE
KVTGLRYKDR TTDEQHDVAL EGIFVQIGLL PNTDWLKGTV ELSPRGEIIV DAKGQTSIPG
VFAAGDVTTV PYKQIVIAVG EGAKASLAAF DHLIRTSAPA
|
|---|
| |