| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2939 |
|---|
| Symbol | |
|---|
| ID | 5870725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3287699 |
|---|
| End bp | 3288613 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641548057 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001669169 |
|---|
| Protein GI | 167033938 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCCGACC TCTCGAAAAA TCCGCTGCTG CAGTACATGG CCCGCCTGGC CCCATCCAGC
CAGCAAACCA TGCGCTACAT CCTTCAGGAC GCCGCCGATC GGCTCGGCTT TGTCGACTGC
AACATCGTCG ATGTGCCCTG GCATCGGCTC GAGCCCGGCC ATGTGATCGC GCTGGTGGCG
GCGCTGCGGG CCGACGGTTA CGCGCCCAAC AGCTCATCGC TGTATGTCAA CGCGATTCGC
GGGGTGATGA ACGAGGCCTG GCGCCAAGGC CTGATCGACC ATGAGCTGCT GTTGCGCATT
CGCGAGGTCA AACCGGCCAC GGGCACCCGC CTGCCGCCAG GGCGCAACCT GCGGCGCAGC
CTGATTCGCG AGTTGATGGA TGTGTGCGCG GCCGACCCCA GGCCACAGGG GGTGCGTGAC
GCGGCGATCA TTGCCTTGCT GTACGGCACA GGCATGCGCA AGTCGGAGTC GGTCGACATC
GACCTCGACC AGGTCGACTT CCAAGCGCGC AGCTTGCAGG TGGTGGGCAA GGGCAACCAC
CAGTTGGTCA AGTACGCACC GCCGTGGGCG TTCGAGAAGT TGCAAGCCTG GCTTGACCTG
CGCCGCCAGG ACCTGCCTGC CGGGGCGGAA GATGACCCGT TCCTGTTCAA CCGCATCCGT
CGTGGCAGCC ACATCACCCG AGCGCGAATC ACCAAGCATG CGATCTACTA CATCGCCCGC
CAGCGCGGCG CGCAGGTGGG GGTGAAGATC ATGCCGCACG ACTTCCGCCG GGCGTTCATT
ACCCGTGTGA TCGAAGAGCA CGACCTGTCG ATCGCGCAGA AGCTGGCGCA CCATGCCAAT
ATCCAGACCA CGGCCATCTA TGACCGGCGT GATGACAACG AGCGCCGGCG TGCGGTGGAC
CGCTTCGACT ACTGA
|
|---|
| Protein sequence | MSDLSKNPLL QYMARLAPSS QQTMRYILQD AADRLGFVDC NIVDVPWHRL EPGHVIALVA
ALRADGYAPN SSSLYVNAIR GVMNEAWRQG LIDHELLLRI REVKPATGTR LPPGRNLRRS
LIRELMDVCA ADPRPQGVRD AAIIALLYGT GMRKSESVDI DLDQVDFQAR SLQVVGKGNH
QLVKYAPPWA FEKLQAWLDL RRQDLPAGAE DDPFLFNRIR RGSHITRARI TKHAIYYIAR
QRGAQVGVKI MPHDFRRAFI TRVIEEHDLS IAQKLAHHAN IQTTAIYDRR DDNERRRAVD
RFDY
|
|---|
| |