| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2427 |
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| Symbol | |
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| ID | 5870216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2714683 |
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| End bp | 2715825 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641547550 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001668662 |
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| Protein GI | 167033431 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.412114 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACT TGCGTGCAAT AGGAATGGCC AGCTGCCTGG CGGCGGCAGT CGCGCTGGCC
GGCTGCGGCG AAGCTGAAGC GCCGCCGTCT GCGGCCCACA GTGCCTTTCC GGTCCAGACC
GTCACGGTCG CCAGCGAACC CCTGACCTTG GCGGCAACGC TGCCGGGCCG GGTCGAACCC
ATGCGGGTGG CCGAGGTTCG CGCCCGAGTG GCCGGCATCG TCCTGCACAA GCGCTTCGAA
GAAGGCGCCG ACGTAAAAGC CGGCGATGTG CTGTTCCAGA TAGACCCGGC ACCCTTCAAG
GCCGCGCTGG CACGCGCCGA GGCCGACCTG GCCAGGGCCC AGTCGGTCAT GTTCGAAGCC
CAGGCGCGGG TACGCCGCTA CGAACCGCTG GTGAAGATCG AGGCAGTCAG CCAGCAGGAC
TTCGACACCG CCAGCGCCGA CCTGCGCAGC GGCCAGGCCG CTGTGCGTTC GGCCCAGGCC
GATGTCGAGA CCGCGCGCCT GAACCTGGGC TACGCCACGG TCAAGGCGCC GATCTCTGGC
CGTATCGGCC GTGCCCTGGT CACCGAAGGT GCGCTGGTGG GGCAGGGCGA CGCCACGCTG
ATGGCGCGCA TCCAGCAACT CGATCCGATT TACGTCGACT TTACCCAGTC CGCCGCCGAC
GCGCTGCGCC TGCGCCAGGC GCTGAAGGAG GGTGCGCTGG CAGCCGGTGA TCAGCAGGCC
CTGACCGCCC AGGTGGAAGG CACCGACTAC GAGCGCCAGG GTGCGCTGAT GTTCACCGAC
GTCGCGGTCG ACCGCGGCAC CGGCCAGGTC ACCTTGCGCG GCCGCTTCGA CAACGCCGAC
GGCATCCTGC TGCCGGGCAT GTATGTGCGC GTGCGCACCC CGCAAGGCAC CGACAACCAG
GCCATCCTTG TGCCGCAGCG CGCCATCCAG CGCGGCAGCG ACGGCGAGGC GCGGGTCATG
CTGGTGGGCA TCGGTGGGGT TGCCGAGGCG CGCAGTGTGC GCACCGGTGC CATGCACGGT
GCCCGCTGGC AAGTCACCGA GGGCTTGCGC CCAGGTGACC AGGTGATCGT CGGCAGCCCT
GCCGGGCTGG CTGCGGGCAT GCCGGTGGTG ACTGCCCCGG CGCAACAAGC CGCAGCACGC
TGA
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| Protein sequence | MSNLRAIGMA SCLAAAVALA GCGEAEAPPS AAHSAFPVQT VTVASEPLTL AATLPGRVEP
MRVAEVRARV AGIVLHKRFE EGADVKAGDV LFQIDPAPFK AALARAEADL ARAQSVMFEA
QARVRRYEPL VKIEAVSQQD FDTASADLRS GQAAVRSAQA DVETARLNLG YATVKAPISG
RIGRALVTEG ALVGQGDATL MARIQQLDPI YVDFTQSAAD ALRLRQALKE GALAAGDQQA
LTAQVEGTDY ERQGALMFTD VAVDRGTGQV TLRGRFDNAD GILLPGMYVR VRTPQGTDNQ
AILVPQRAIQ RGSDGEARVM LVGIGGVAEA RSVRTGAMHG ARWQVTEGLR PGDQVIVGSP
AGLAAGMPVV TAPAQQAAAR
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