| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2040 |
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| Symbol | |
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| ID | 5869829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 2289353 |
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| End bp | 2290201 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641547165 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001668277 |
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| Protein GI | 167033046 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.842464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAC AAGCCATCCT CGCCGGCCTG ATCGGCCGCG GCATCCAGCT GTCGCGCACC
CCCGCCCTGC ACGAACACGA AGGCGACGCG CAGGCCTTGC GTTACCTGTA CCGCCTGATC
GATGCCGACC AGTTGCAACT GGACGACAGC GCCCTGCCCG GCCTGCTTGA CGCCGCGCAG
CACACCGGTT TTACCGGGCT CAACATCACC TACCCGTTCA AGCAGGCGAT TCTGCCGTTG
CTCGACGAGC TGTCCGACGA AGCCCGTGGC ATCGGTGCGG TGAACACCGT GGTGCTCAAG
GACGGCAAGC GGGTCGGCCA CAACACCGAT TGCCTGGGTT TTGCCGAGGG CTTGCGCCGT
GGCCTGCCCG ACGTCGCGCG GCGCCAGGTG GTGCAGATGG GCGCTGGCGG TGCAGGCTCG
GCCGTGGCCC ATGCCCTGCT GGGTGAAGGG GTCGAGCGGC TGGTGCTGTT CGAAGTGGAC
GCTGCCCGTG CACAGGCATT GGTAGACAAC CTGAACGCTC ATTTCGGCGC CGGTCGTGCC
GTGGTCGGCA CGGACCTGGC CACGGCATTG GCCGAAGCGG ACGGGCTGGT CAACACCACC
CCGGTGGGCA TGGCCAAGCT ACCAGGCACC CCACTGCCGG TAGCGTTGCT GCATGCACGC
CTGTGGGTGG CGGAAATCAT CTACTTCCCC CTGGAGACCG AACTGCTGCG CGCGGCCCGG
GCACTGGGTT GCCGCACCCT GGATGGCAGC AACATGGCCG TGTTCCAGGC GGTGAAGGCG
TTCGAGCTGT TCAGCGGGCA ACAGGCGGAT GCGGCACGGA TGCAGGCGCA TTTCGCCAGC
TTCACCTGA
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| Protein sequence | MSQQAILAGL IGRGIQLSRT PALHEHEGDA QALRYLYRLI DADQLQLDDS ALPGLLDAAQ
HTGFTGLNIT YPFKQAILPL LDELSDEARG IGAVNTVVLK DGKRVGHNTD CLGFAEGLRR
GLPDVARRQV VQMGAGGAGS AVAHALLGEG VERLVLFEVD AARAQALVDN LNAHFGAGRA
VVGTDLATAL AEADGLVNTT PVGMAKLPGT PLPVALLHAR LWVAEIIYFP LETELLRAAR
ALGCRTLDGS NMAVFQAVKA FELFSGQQAD AARMQAHFAS FT
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