| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1546 |
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| Symbol | |
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| ID | 5869326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1739314 |
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| End bp | 1740201 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546664 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001667787 |
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| Protein GI | 167032556 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.493035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.546364 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTA TCGAAGTGAT GCGCCTGCCG CTGTCGGTCG ACCTCAGCGG CTTCGTTCAC
CTGCTGCAGC GCCTGCAGGT GCCACACCGG GTCAGCGAGG AGGGCGATGC CCAGGTCCTC
TGGGCCCCCG ATACCCTGGC CCAAGACGTG CTGCAGCTGT ACCAGCGCTA CCCCGACGGC
AACGCCGACC TCGAACTTGC ACAGGACCCT GGGGGAGCGG GCCTGCCCGC GAATAGCCCC
GCACAACCCT CCCTGGTAGA ACAAGCCAAA GCCTGCAAGG TCACCACCCT CACTCTGCTG
CTGTGCTTCA TTGTCGCCGG CCTCACCAGC CTGGGTGACA ACTTCACCAC CATCAGCTGG
TTCACTTTCC TCGACTTCCG CGTCCAGGGC GACTACCTGT ACTTCAGCTC GCTGGCGCAA
AGCCTGGACG AAGGCCAGTG GTGGCGCCTG GTATCGCCCA TGCTGCTGCA TTTCGGCGTG
CTGCACCTGG CCATGAACAG CCTGTGGTAC TGGGAGCTGG GCAAGCGCAT CGAGCTGCGC
CAAGGGCCCT GGATGCTGCT GGGCCTGACC CTGTTGTTCA GCCTGGTTTC CAACCTGGCC
CAGCACTACA CCAGCGGGCC AAGCCTGTTT GGCGGCCTGT CCGGCGTGCT GTACGGCCTG
CTCGGGCATG TGTGGCTGTT CCAGTGGCTG GCGCCCAACC GTTACTTCAA CCTGCCCAAG
GGTGTGCTGG TGATGATGCT GATCTGGCTG GTGGTGTGCC TGACCGGTGT GGTCGGCACC
CTCGGCCTTG GCCAGATCGC CAATGCCGCC CACGTCGGCG GGCTGCTCAT CGGATGCCTG
ACCGGGCTCT TGGGTGGGGC GCTGGCCCGG CGTAAACTGT CGGCTTGA
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| Protein sequence | MNIIEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGDAQVL WAPDTLAQDV LQLYQRYPDG
NADLELAQDP GGAGLPANSP AQPSLVEQAK ACKVTTLTLL LCFIVAGLTS LGDNFTTISW
FTFLDFRVQG DYLYFSSLAQ SLDEGQWWRL VSPMLLHFGV LHLAMNSLWY WELGKRIELR
QGPWMLLGLT LLFSLVSNLA QHYTSGPSLF GGLSGVLYGL LGHVWLFQWL APNRYFNLPK
GVLVMMLIWL VVCLTGVVGT LGLGQIANAA HVGGLLIGCL TGLLGGALAR RKLSA
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